Gene Discovery for Pneumococcal Otitis Media

描述（由申请人提供）：中耳炎（OM）是美国寻求医疗护理的幼儿中最常见的细菌感染，肺炎链球菌菌株是细菌OM的主要原因。这些革兰氏阳性双球菌在高达50%的健康儿童的呼吸道中定植，仅在特殊情况下才会引起疾病。最近的基因组测序项目和分子生物学的进步导致了许多推定的毒力因子的鉴定。这些因素主要在侵袭性肺炎球菌疾病（如肺炎）的背景下进行研究，或者在一种或几种实验室菌株中进行研究。虽然更多的毒力因子仍有待发现，新的挑战是确定这些许多因素值得进一步研究，这些因素具体到OM发病机制，并估计这些毒力因子之间的相对重要性S。循环中的肺炎菌株。这个项目是建立在观察S。肺炎菌株在它们引起疾病的能力方面不同，并且这些差异可能是由于菌株之间的遗传差异延伸到多糖荚膜之外。本项目的目的是鉴定与肺炎球菌OM相关的基因，并评估从健康儿童和临床疾病儿童中获得的分离株中肺炎球菌毒力基因的相对频率。利用分子生物学和流行病学技术的四步跨学科方法将包括：1。选择S。pneumoniae菌株进行基因组扣除，具有最高的潜力来鉴定与OM相关的基因。2.使用基因组减法鉴定引起OM的菌株（试验菌株）特有的DNA序列（sPCR片段），以及健康携带者菌株（驱动菌株）中缺失的DNA序列。3.使用sPCR片段对来自健康儿童和患有OM、脑膜炎、肺炎或菌血症的儿童的大量分离株进行流行病学筛查。4.鉴定与OM发病机制重要的sPCR片段相关的基因，并描述其生物学和临床特征。发现更多的因素参与链球菌OM将促进发展新的战略，控制和预防这一重要疾病。

DESCRIPTION (provided by applicant): Otitis media (OM) is the most common bacterial infection in the United States among young children for which medical care is sought, and Streptococcus pneumoniae strains are the leading cause of bacterial OM. These gram-positive diplococci colonize the respiratory tract in up to 50% of healthy children and only cause disease under special circumstances. Recent genomic sequencing projects and advancements in molecular biology have resulted in the identification of numerous putative virulence factors. These factors have mainly been studied in the context of invasive pneumococcal diseases such as pneumonia, or have been studied in one or a few laboratory strains. While more virulence factors remain to be discovered, the new challenge is to identify which of these many factors warrant further study, to link these factors specifically to OM pathogenesis, and to estimate the relative importance of these virulence factors among the S. pneumoniae strains in circulation. This project is built on the observation that S. pneumoniae strains differ in their ability to cause disease, and that these differences are likely due to genetic differences between strains that extend beyond the polysaccharide capsule. The goal of this project is to identify genes associated with pneumococcal OM and to evaluate the relative frequency of pneumococcal virulence genes among a collection of isolates obtained from healthy children and children with clinical disease. A four step interdisciplinary approach utilizing techniques of molecular biology and epidemiology will include: 1. Selection of S. pneumoniae strains for genomic subtraction with the highest potential to identify genes associated with OM. 2. Identification of DNA sequences (sPCR fragments) unique to strains causing OM (tester strains) and absent in strains from healthy carriers (driver strains) using genomic subtraction. 3. Epidemiologic screening of a large collection of isolates from healthy children and children with OM, meningitis, pneumonia, or bacteremia using sPCR fragments. 4. Identification of genes associated with sPCR fragments important for OM pathogenesis and description of their biological and clinical characteristics. Discovery of additional factors involved in streptococcal OM will facilitate the development of new strategies for the control and prevention of this important disease.