Regulation of Gene Expression in Borrelia burgdorferi

描述（由申请人提供）：伯氏疏螺旋体细菌导致莱姆病。B的传输。从其蜱载体向哺乳动物宿主传播伯氏螺旋体并感染哺乳动物需要改变传播和感染所需的一系列基因的表达。基因表达程序的变化受到与蜱虫进食相关的环境信号（包括温度升高）的调节。基因表达中最显著的变化是主要外表面脂蛋白（包括OspC）的相互调节，这是传播和感染所必需的。ospC基因表达的诱导依赖于替代σ因子RpoS（C38或CS）。本申请的中心假设是RpoS是地方病循环的关键调节因子，因此通过几种调节机制充当多个信号的靶标。具体的假设是，RpoS和OspC的合成是积极和消极的调节通过几个反式作用机制，包括翻译控制的小调节RNA的温度和翻译后降解的蛋白酶。该调节也被假设为通过顺式作用的DNA超螺旋响应于温度来调节。本提案的长期目标是了解OspC在B传播中的功能和调节。这将导致改进的诊断、预防和治疗策略，因为B需要OspC的表达。这与该机构为减轻人类疾病而追求基础知识的使命有关。为了实现这一目标，提出了以下具体目标：1）鉴定和表征抑制RpoS和/或OspC合成的因子; 2）鉴定和表征诱导RpoS和/或OspC合成的因子;以及3）定义OspC在传播中的时间要求并确定RpoS在哺乳动物感染期间调节OspC的作用。将利用遗传学、生物化学、分子、转录组学和蛋白质组学方法来检验这些假设。具体而言，编码调控因子的基因将被破坏和/或融合到新的诱导型启动子上，以测定培养物和蜱-小鼠模型中的功能，构建报告基因融合体以定量测定基因表达，通过RNA结合实验探测小RNA的调控机制，并通过微阵列和蛋白质鉴定确定DNA超螺旋对基因表达的整体影响。

DESCRIPTION (provided by applicant): The bacterium Borrelia burgdorferi causes Lyme disease. Transmission of B. burgdorferi from its tick vector to a mammalian host and infection of the mammal require changes in the expression of a suite of genes required for transmission and infection. The change in the program of gene expression is regulated in response to environmental signals associated with tick feeding, including increased temperature. The most dramatic change in gene expression is the reciprocal regulation of the major outer surface lipoproteins, including OspC, which is required for transmission and infection. The induction of ospC gene expression is dependent on the alternative sigma factor RpoS (C38 or CS). The central hypothesis of this application is that RpoS is the key regulator of the enzootic cycle and thus serves as the target of multiple signals through several regulatory mechanisms. The specific hypotheses are that RpoS and OspC syntheses are positively and negatively regulated through several trans-acting mechanisms, including translational control by a small regulatory RNA in response to temperature and post-translational degradation by a protease. The regulation is also hypothesized to be regulated through cis-acting DNA supercoiling in response to temperature. The long-term objective of this proposal is to understand the function and regulation of OspC in transmission of B. burgdorferi and pathogenesis of Lyme disease, which will lead to improved diagnostic, prevention, and treatment strategies because expression of OspC is required for B. burgdorferi to cause Lyme disease; this is relevant to the mission of the agency to pursue fundamental knowledge for the sake of alleviating human disease. The following specific aims are proposed toward achieving this objective: 1) identify and characterize factors that repress RpoS and/or OspC syntheses; 2) identify and characterize factors that induce RpoS and/or OspC syntheses; and 3) define the temporal requirement for OspC in transmission and determine the role of RpoS in regulating OspC during mammalian infection. Genetic, biochemical, molecular, transcriptomic, and proteomic approaches will be utilized to test these hypotheses. Specifically, genes encoding regulatory factors will be disrupted and/or fused to the new inducible promoter to assay function both in culture and in a tick-mouse model, reporter fusions will be constructed to quantitatively assay gene expression, the regulatory mechanism of the small RNA will be probed by RNA binding experiments, and the global effect of DNA supercoiling on gene expression will be determined by microarray and protein identification.