An optogenetic method to rapidly and reversibly titrate protein levels in cells

描述（由申请人提供）：基因敲除/敲低等功能丧失方法已被广泛用于鉴定组织各种细胞行为所必需的蛋白质。然而，常见的方法，如遗传学或RNAi，会永久地改变细胞环境。经过数天或数周的积累，代偿性变化会改变细胞的生理机能，并混淆结论。目前的方法在更快（秒）的时间尺度上起作用，在特异性上有局限性，通常是不可逆的，难以滴定，或者难以应用于广泛的靶蛋白。此外，在大多数情况下

DESCRIPTION (provided by applicant): Loss-of-function approaches such as gene knockout/knockdown have been widely used to identify the proteins that are necessary to organize various cellular behaviors. However common approaches, such as genetics or RNAi, change the cellular environment permanently. Over days and weeks compensatory changes can accumulate, alter the cell's physiology, and confound conclusions. Current approaches that act on faster (seconds) timescales have limitations in their specificity, are often irreversible, hrd to titrate, or difficult to apply to a wide range of target proteins. Moreover, in cases where most components of a pathway have been identified, questions shift towards timing "At what stage is my protein involved?" and level "Is cell behavior sensitive to the concentration of my protein?" Answers to such questions require the ability to trigger, set, reverse, and monitor the extent of protein inactivation with high precision - an area where traditional methods fail, and new tools are required. Towards this end, we are developing an optogenetics based loss-of-function method termed DeLIGHT (Depletion with LIGHT), as a much-needed tool for the growing field of single-cell biochemistry. We have recently made breakthroughs in developing a light-induced protein interaction module and will here combine this tool with an 'anchor away' strategy to reversibly sequester proteins at inert intracellular locations. Our technique is generalizable, acute, and reversible, enabling significantly greater control over protein activity than existing inactivation methods. DeLight makes it possible to measure single-cell responses at user-defined intermediate concentrations of a protein of interest, where the extent of inactivation can be visually monitored and set by the user in an interactive fashion. We propose to establish and optimize this approach in 3 model systems - Dictyostelium, budding yeast, and mammalian cells to test the modularity of this system, demonstrate its versatility, and provide tools for immediate application by the cell biology community.