Technology Development for Recombinant Affinity Reagents

我们建议形成一个研究合作，我们改进目前用于产生亲和试剂的筛选和评估技术。我们打算改进发现过程，使其不仅比目前可能的更便宜和更快，而且使我们生产的试剂比目前的单克隆抗体更通用和有用。该中心将涉及Brian Kay博士（伊利诺伊大学芝加哥分校）、Andreas Pluckthun（苏黎世大学）和Michael Weiner（Illumina Corporation）的实验室。我们将重点介绍三种类型的重组亲和试剂：人单链可变区片段（scFv），设计的锚蛋白重复蛋白（DARPins）和纤连蛋白III型（FN 3）单体。Aled Edwards博士（结构基因组学中心）将为我们提供100个目标，我们将应用我们的技术改进。我们还将使用合成肽，对应于一组测试蛋白质的N-末端和C-末端，作为靶标。我们的研究计划包括三个战略目标。首先，通过分子工程，我们将产生多功能的亲和试剂，可以完成抗体的许多标准任务，以及作为生物传感器和细胞内靶点的诱导型抑制剂。其次，我们计划通过使用乳剂来改进我们目前的选择方案，使其更快，更小，更便宜，更好。第三，除了我们自己的表征之外，我们还将向五个β测试人员分发亲和试剂，以评估其在生物学应用中的作用，并收到关于亲和试剂应具有哪些额外特性的反馈。一旦我们准备好并审查了高质量的亲和试剂，它们将通过亚利桑那州立大学的DNA储存库和两家试剂供应公司提供。我们研究的首要目标是优化技术，以一种通用、强大、经济高效和高通量的方式应用于整个人类蛋白质组。

We propose to form a research collaboration in which we improve upon the screening and evaluation technologies currently used to generate affinity reagents. We intend to refine the discovery process so that it is not only cheaper and faster than currently possible, but also so that we produce reagents that are more versatile and useful than current monoclonal antibodies. This Center will involve the laboratories of Drs. Brian Kay (University of Illinois at Chicago), Andreas Pluckthun (University of Zurich), and Michael Weiner (lllumina Corporation). We will focus on three types of recombinant affinity reagents: human single-chain Fragments of variable regions (scFv), Designed Ankyrin Repeat Proteins (DARPins), and fibronectin type III (FN3) monobodies. Dr. Aled Edwards (Structural Genomics Center) will supply us with 100 targets to which we will apply our technology improvements. We will also use synthetic peptides, corresponding to the N-termini and C-termini of a test set of proteins, as targets. Our research plan consists of three strategic goals. First, through molecular engineering we will generate versatile affinity reagents that can accomplish the many standard tasks of antibodies, as well as function as biosensors and inducible inhibitors of intracellular targets. Second, we plan to improve our current selection protocols by using emulsions to make them faster, smaller, cheaper, and better. Third, in addition to our own characterization, we will distribute affinity reagents to five beta-testers for their evaluation in biological applications and receive feedback on what additional properties should be engineered into the affinity reagents. Once we have prepared and vetted high quality affinity reagents, they will be made available through the DNA repository at Arizona State University and two reagent supply companies. The overarching goal of our research will be to optimize technologies that can be applied to the entire human proteome in a versatile, powerful, cost-effective, and high-throughput manner.