Epigenetic and Developmental Regulation of Mammalian Genes

Ldb1/NLI复合体，包括GATA-1和TAL1，在成年小鼠红细胞中介导β -珠蛋白位点控制区（LCR）和基因之间的远距离相互作用，但该复合体是否在其他发育阶段或在人类细胞中介导染色质相互作用尚不清楚。胎儿γ -珠蛋白基因可以通过细胞因子在成人红细胞中被重新激活。我们研究了当γ -珠蛋白被抑制或再激活时，这些细胞中β -珠蛋白位点的激活因子、抑制因子和共抑制因子的占用和染色质构象。在主要转录-珠蛋白的细胞中，γ -珠蛋白抑制因子BCL11A占据a- γ -珠蛋白基因下游的一个位点，该位点位于基因间RNA转录物BGL3的序列内。Ldb1/NLI复合体也占据BGL3序列和LCR以及共抑制因子ETO2。在这些条件下，LCR和-珠蛋白基因之间的长期相互作用被观察到。相反，当γ -珠蛋白被重新激活时，BCL11A在BGL3上的占用丢失，BGL3和γ -珠蛋白都被转录。ETO2不再参与Ldb1/NLI复合物，并且γ -珠蛋白/BGL3区域与LCR之间建立了邻近关系。这些结果表明，多种Ldb1/NLI复合物通过涉及非编码RNA转录基因间位点的LCR远距离相互作用介导γ -珠蛋白转录或沉默。此外，ETO2加入γ -珠蛋白抑制因子BCL11A作为治疗靶点，改善镰状细胞病和β -地中海贫血。

The Ldb1/NLI complex, including GATA-1 and TAL1, mediates long range interaction between the beta-globin locus control region (LCR) and gene in adult mouse erythroid cells, but whether this complex mediates chromatin interactions at other developmental stages or in human cells is unknown. Fetal gamma-globin genes can be robustly re-activated in adult human erythroid cells by cytokines. We investigated activator, repressor and co-repressor occupancy and chromatin conformation of the beta-globin locus in these cells when gamma-globin is either repressed or re-activated. In cells transcribing primarily beta-globin, the gamma-globin repressor BCL11A occupies a site downstream of the A-gamma globin gene, which is within sequences of BGL3, an intergenic RNA transcript. The Ldb1/NLI complex also occupies BGL3 sequences as well as the LCR together with the co-repressor ETO2. In these conditions, long range interactions between the LCR and the beta-globin gene are observed. In contrast, when gamma-globin is re-activated, BCL11A occupancy at BGL3 is lost and both BGL3 and gamma-globin are transcribed. ETO2 no longer participates in the Ldb1/NLI complex and proximity between the gamma-globin/BGL3 region and LCR is established. These results implicate diverse Ldb1/NLI complexes in mediating gamma-globin transcription or silencing through long range LCR interactions involving an intergenic site of non-coding RNA transcription. Furthermore, ETO2 joins gamma-globin repressor BCL11A as a therapeutic target to ameliorate Sickle Cell Disease and beta-thalassemia. How individual globin genes establish stage specific enhancer communication is unknown and most studies have been performed in a non-chromosomal environment. We are using homologous recombination in mouse ES cells to address this issue. We targeted a region upstream of the mouse embryonic epsilon y gene and a second region upstream of beta-major in ES cells and then used recombinase mediated cassette exchange to insert the chicken HS4 insulator in these two positions which are (1) between the LCR and the globin genes and (2) between the embryonic and adult genes. We differentiated ES cells with erythropoietin along erythroid lines and then monitored globin gene expression. The cHS4 insertion between the LCR and downstream genes reduced transcription of the embryonic ey, beta-h1 and beta major genes and resulted in non-genic transcript accumulation in the insulator. Currently, we are investigating localization of RNA polymerase II and other factors such as GATA1 and Ldb1 from the LCR to 3HS1 using chromatin immunoprecipitation to understand the molecular mechanism underlying insulation. In addition, we plan to monitor globin gene transcription of ES cells that have cHS4 between the embryonic globin genes and the beta major gene. Furthermore, we are using blastocyst injection of our ES cell clones to mouse lines with insertions of cHS4 at these two positions in the beta-globin locus. These experiments are novel since they alter transcription factor recruitment and chromatin organization in a normal chromosomal setting and will provide information on how the LCR and globin genes communicate in vivo during development and during globin gene switches from embryonic to adult types.