Biogenesis of bacterial autotransporter proteins

我们一直以大肠杆菌O157:H7产生的自转运蛋白EspP作为模型蛋白来研究自转运蛋白的生物发生。在一条主要的研究路线中，我们一直在研究EspP乘客结构域跨外膜（OM）易位的机制。最初提出，乘客结构域是通过共价连接的β结构域形成的通道分泌的（因此得名自转运蛋白），但我们从生化和结构研究中获得的结果与这一假设不一致。我们发现，将一个小的连接子插入到EspP乘客结构域中，通过在插入位点附近暂时停止易位，有效地创建了一个易位中间体。通过使用位点特异性光交联方法，我们发现与失速点相邻的残基与BamA相互作用，BamA是一种催化OM蛋白组装的异聚物复合物（Bam复合物）的组成部分，而被捕获在外质（两细胞膜之间的空间）中的残基与伴侣蛋白SurA和Skp相互作用。EspP-BamA相互作用是短暂的，只有在乘客域易位停止时才能被检测到。这些结果支持了一个模型，在这个模型中，分子伴侣在其分泌之前阻止了客运结构域的错误折叠，而Bam复合体在促进β结构域整合到OM和客运结构域跨OM的易位方面发挥了重要作用。我们还发现，质周伴侣和Bam复合物的特定成分与EspP β结构域以一种时间和空间调节的方式相互作用。当伴侣蛋白Skp最初与整个β结构域相互作用时，BamA、BamB和BamD随后与离散的β结构域相互作用。BamB和BamD与β结构域的结合时间比BamA长，因此在组装的后期才发挥作用。我们的研究结果表明，迄今为止神秘的BamB和BamD蛋白在自转运蛋白β结构域和其他β桶蛋白的膜整合中起直接作用。

We have been using an autotransporter produced by E. coli O157:H7 called EspP as a model protein to study autotransporter biogenesis. In one major line of investigation we have been examining the mechanism by which the EspP passenger domain is translocated across the outer membrane (OM). It was originally proposed that the passenger domain is secreted through a channel formed by the covalently linked beta domain (whence the name autotransporter), but results that we obtained from both biochemical and structural studies are inconsistent with this hypothesis. We found that the insertion of a small linker into the EspP passenger domain effectively creates a translocation intermediate by transiently stalling translocation near the site of the insertion. By using a site-specific photocrosslinking approach we found that residues adjacent to the stall point interact with BamA, a component of a heterooligomeric complex (Bam complex) that catalyzes OM protein assembly, and that residues that are trapped in the periplasm (the space between the two cell membranes) interact with the chaperones SurA and Skp. The EspP-BamA interaction is short-lived and can only be detected when passenger domain translocation is stalled. These results support a model in which molecular chaperones prevent misfolding of the passenger domain prior to its secretion and the Bam complex plays a major role in facilitating both the integration of the beta domain into the OM and the translocation of the passenger domain across the OM. We also found that periplasmic chaperones and specific components of the Bam complex interact with the EspP beta domain in a temporally and spatially regulated fashion. While the chaperone Skp initially interacts with the entire beta domain, BamA, BamB and BamD subsequently interact with discrete beta domain regions. BamB and BamD remain bound to the beta domain longer than BamA and therefore appear to function at a later stage of assembly. Our results suggest that the hitherto enigmatic BamB and BamD proteins play a direct role in the membrane integration of autotransporter beta domains and possibly other beta barrel proteins. In a second series of studies we have been examining the energetics of passenger domain secretion. Because the periplasm lacks ATP, the source of energy that drives passenger domain secretion is unknown. The prevailing model postulates that vectorial folding of the passenger domain in the extracellular space facilitates unidirectional secretion. We used a chimeric protein composed of the receptor-binding domain (RD) of the Bordetella pertussis adenylate cyclase toxin CyaA fused to the C-terminus of EspP to test this hypothesis. The RD is a highly acidic, repetitive polypeptide that is intrinsically disordered in the absence of calcium. Surprisingly, we found that the RD moiety is efficiently secreted when it remained in an unfolded conformation. Furthermore, we found that neutralizing or reversing the charge of acidic amino acid clusters stalls translocation in the vicinity of the altered residues. These results challenge the vectorial folding model and, taken together with an analysis of naturally occurring passenger domain sequences, provide evidence that a net negative charge plays a significant role in driving the translocation reaction. Recently, we were able to reconstitute the assembly of EspP in vitro using purified components. We found that the Bam complex and SurA are both necessary and sufficient to promote the integration of the EspP beta domain into proteoliposomes and the translocation of the passenger domain into the lumen of the vesicles. The reaction does not require ATP or other exogenous energy source. Because passenger domain translocation proceeds in a C-to-N-terminal direction, we were able to examine the assembly of N-terminally truncated EspP derivatives that have different length passenger domains. Interestingly, we found that the rate of assembly is independent of passenger domain length. This observation suggests that the membrane integration of the beta domain is the rate-limiting step in autotransporter assembly. We also found that a single copy of the Bam complex incorporated into nanodiscs is sufficient to catalyze EspP assembly.