Long-Read DNA Sequencing and RNA Sequencing in LFS-Like Families
Long-Read DNA Sequencing and RNA Sequencing in LFS-Like Families
批准号:
10926535
负责人:
Padma Rajagopal
金额:
$11.43万
依托单位国家:
美国
项目类别:
财政年份:
--
资助国家:
美国
项目状态:
未结题
起止时间:
至
关键词:
BloodBlood specimenCCRCollaborationsDNADNA Sequence AlterationDNA sequencingDataDivision of Cancer Epidemiology and GeneticsDoctor of PhilosophyEtiologyFamilyFamily memberGene ExpressionGenesGoalsHereditary Malignant NeoplasmInheritedMalignant NeoplasmsMethylationMutationNatural HistoryPathogenicityPatientsPilot ProjectsRNARNA SplicingRecording of previous eventsReproducibilityRiskSamplingSiteSyndromeTP53 geneTechnologyTestingVariantcancer preventioncancer riskcancer typecohortexperiencegenetic variantimprovednext generationtranscriptometranscriptome sequencingtumorvariant of interest
中文摘要
在这项先导性研究中,从DCEG的LFS自然病史队列中确定了21名患者,并提供了可用的血液样本,但没有已知的TP53突变。对于已确定的任何感兴趣的变种,都已确定了家庭关系和联系的特征。这些患者目前正在接受血液中长时间阅读的DNA(与Michael Dean合作,DCEG博士进行测序解释,Misha Kolmogorov博士,CCR博士进行计算评估)和全转录组RNA-seq(包括剪接点评估和相对基因表达水平)。
英文摘要
For this pilot study, 21 patients were identified from the LFS natural history cohort in DCEG with available blood samples and no known TP53 mutation. Familial relationships and ties have been characterized for any variants of interest that are identified. These patients are currently undergoing long-read DNA from blood (collaborating with Michael Dean, PhD in DCEG for sequencing interpretation, Misha Kolmogorov, PhD in CCR for computational assessment) and whole-transcriptome RNA-seq (including splice-site assessment and relative gene-expression levels).
期刊论文(0)
专著(0)
科研奖励(0)
会议论文
Leveraging RNA and synthetic lethality in germline BRCA-mut breast cancer
-
批准号:10926478
-
项目类别:
-
资助金额:$17.14万
-
财政年份:--
-
负责人:Padma Rajagopal
-
依托单位:
Germline-Somatic Interactions and Association with Treatment Response in Cancer
-
批准号:10926516
-
项目类别:
-
资助金额:$8.57万
-
财政年份:--
-
负责人:Padma Rajagopal
-
依托单位:
Identifying synthetic lethal targets in metastatic triple negative breast cancer
-
批准号:10487156
-
项目类别:
-
资助金额:$1.46万
-
财政年份:--
-
负责人:Padma Rajagopal
-
依托单位:
Identifying Treatment Options using RNA-Based Synthetic Lethality and Rescue
-
批准号:10926479
-
项目类别:
-
资助金额:$17.14万
-
财政年份:--
-
负责人:Padma Rajagopal
-
依托单位:
Leveraging RNA and synthetic lethality in germline BRCA-mut breast cancer
-
批准号:10702842
-
项目类别:
-
资助金额:$15.81万
-
财政年份:--
-
负责人:Padma Rajagopal
-
依托单位:
Identifying germline-somatic and synthetic lethal targets in hereditary cancers
-
批准号:10487155
-
项目类别:
-
资助金额:$5.85万
-
财政年份:--
-
负责人:Padma Rajagopal
-
依托单位:
Identifying Treatment Options using RNA-Based Synthetic Lethality and Rescue
-
批准号:10702843
-
项目类别:
-
资助金额:$15.81万
-
财政年份:--
-
负责人:Padma Rajagopal
-
依托单位:
Germline-Somatic Interactions and Association with Treatment Response in Cancer
-
批准号:10702885
-
项目类别:
-
资助金额:$21.08万
-
财政年份:--
-
负责人:Padma Rajagopal
-
依托单位:
IDENTIFY Study: Natural History of Maternal Neoplasia
-
批准号:10926536
-
项目类别:
-
资助金额:$2.86万
-
财政年份:--
-
负责人:Padma Rajagopal
-
依托单位:
海外基金