DDBJ launches a new archive database with analytical tools for next-generation sequence data.
DDBJ launches a new archive database with analytical tools for next-generation sequence data.
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DOI：
10.1093/nar/gkp847
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发表时间：
2010-01
影响因子：
14.9
通讯作者：
Nakamura Y
中科院分区：
文献类型：
--
作者：
Kaminuma E;Mashima J;Kodama Y;Gojobori T;Ogasawara O;Okubo K;Takagi T;Nakamura Y
日本DNA数据库（DDBJ）（http://www.ddbj.nig.ac.jp）已收集并发布了1 701 110个条目/1 116 138 614 2008年7月至2009年6月之间。来自DDBJ是白蚁肠道中的内共生细胞中的完整基因组序列，并从哺乳动物cDNA的功能注释中沉积的人和小鼠的cap分析基因表达标签财团。在此期间，我们使用真正的简单联合组织（RSS）开始了每天从DDBJ发布的数据列表。此外，启动了一个用于下一代序列的测序数据的新档案，即“ DDBJ Read Archive”（DRA）。半自动注释工具称为“ DDBJ读取管道”作为初步步骤，该管道由两个部分组成：参考基因组映射和从头组装的基本分析以及结构和功能注释的高级分析服务将帮助用户的研究，并更容易访问DDBJ数据库。
The DNA Data Bank of Japan (DDBJ) (http://www.ddbj.nig.ac.jp) has collected and released 1 701 110 entries/1 116 138 614 bases between July 2008 and June 2009. A few highlighted data releases from DDBJ were the complete genome sequence of an endosymbiont within protist cells in the termite gut and Cap Analysis Gene Expression tags for human and mouse deposited from the Functional Annotation of the Mammalian cDNA consortium. In this period, we started a novel user announcement service using Really Simple Syndication (RSS) to deliver a list of data released from DDBJ on a daily basis. Comprehensive visualization of a DDBJ release data was attempted by using a word cloud program. Moreover, a new archive for sequencing data from next-generation sequencers, the ‘DDBJ Read Archive’ (DRA), was launched. Concurrently, for read data registered in DRA, a semi-automatic annotation tool called the ‘DDBJ Read Annotation Pipeline’ was released as a preliminary step. The pipeline consists of two parts: basic analysis for reference genome mapping and de novo assembly and high-level analysis of structural and functional annotations. These new services will aid users’ research and provide easier access to DDBJ databases.
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DOI：
10.1093/dnares/dsn008
发表时间：
2008-08
期刊：
DNA research : an international journal for rapid publication of reports on genes and genomes
影响因子：
--
作者：
Sato S;Nakamura Y;Kaneko T;Asamizu E;Kato T;Nakao M;Sasamoto S;Watanabe A;Ono A;Kawashima K;Fujishiro T;Katoh M;Kohara M;Kishida Y;Minami C;Nakayama S;Nakazaki N;Shimizu Y;Shinpo S;Takahashi C;Wada T;Yamada M;Ohmido N;Hayashi M;Fukui K;Baba T;Nakamichi T;Mori H;Tabata S
通讯作者：
Tabata S
影响因子：
2
作者：
Ikeo, K;Ishi-i, J;Tateno, Y
通讯作者：
Tateno, Y
影响因子：
56.9
作者：
Hongoh, Yuichi;Sharma, Vineet K.;Ohkuma, Moriya
通讯作者：
Ohkuma, Moriya
影响因子：
14.9
作者：
Parkinson H;Kapushesky M;Kolesnikov N;Rustici G;Shojatalab M;Abeygunawardena N;Berube H;Dylag M;Emam I;Farne A;Holloway E;Lukk M;Malone J;Mani R;Pilicheva E;Rayner TF;Rezwan F;Sharma A;Williams E;Bradley XZ;Adamusiak T;Brandizi M;Burdett T;Coulson R;Krestyaninova M;Kurnosov P;Maguire E;Neogi SG;Rocca-Serra P;Sansone SA;Sklyar N;Zhao M;Sarkans U;Brazma A
通讯作者：
Brazma A
影响因子：
14.9
作者：
Sugawara H;Ikeo K;Fukuchi S;Gojobori T;Tateno Y
通讯作者：
Tateno Y