Plant Reactome Knowledgebase: empowering plant pathway exploration and OMICS data analysis.
Plant Reactome Knowledgebase: empowering plant pathway exploration and OMICS data analysis.
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Plant Reactome Knowledgebase：授权植物途径探索和OMICS数据分析。
DOI：
10.1093/nar/gkad1052
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发表时间：
2024-01-05
影响因子：
14.9
通讯作者：
中科院分区：
文献类型：
--
作者：
Plant Reactome（https：//www.example.com）是一个免费访问的综合性植物途径知识库。它提供了从水稻（Oryza sativa）到129个其他物种的策划参考途径和基于基因同源性的途径预测，涵盖了单细胞光合自养生物，非维管植物和高等植物，从而涵盖了广泛的分类多样性。目前，Plant Reactome包含339个参考途径，涵盖代谢和运输途径，激素信号传导，发育过程的遗传调控，以及协调植物对非生物和生物刺激的反应的复杂转录网络。除了作为一个简单的存储库，Plant Reactome还作为一个动态数据发现平台。用户可以分析和可视化组学数据，如基因表达，基因-基因相互作用，蛋白质组和代谢组数据，所有这些都在植物途径的丰富背景下。Plant Reactome致力于促进数据互操作性，维护全球数据标准，并遵循可查找、可扩展、可互操作和可重用（FAIR）数据政策的原则。
Plant Reactome (https://plantreactome.gramene.org) is a freely accessible, comprehensive plant pathway knowledgebase. It provides curated reference pathways from rice (Oryza sativa) and gene-orthology-based pathway projections to 129 additional species, spanning single-cell photoautotrophs, non-vascular plants, and higher plants, thus encompassing a wide-ranging taxonomic diversity. Currently, Plant Reactome houses a collection of 339 reference pathways, covering metabolic and transport pathways, hormone signaling, genetic regulations of developmental processes, and intricate transcriptional networks that orchestrate a plant's response to abiotic and biotic stimuli. Beyond being a mere repository, Plant Reactome serves as a dynamic data discovery platform. Users can analyze and visualize omics data, such as gene expression, gene-gene interaction, proteome, and metabolome data, all within the rich context of plant pathways. Plant Reactome is dedicated to fostering data interoperability, upholding global data standards, and embracing the tenets of the Findable, Accessible, Interoperable and Re-usable (FAIR) data policy.
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影响因子：
5.1
作者：
Barker, Richard;Kruse, Colin P. S.;Johnson, Christina;Saravia-Butler, Amanda;Fogle, Homer;Chang, Hyun-Seok;Trane, Ralph Moller;Kinscherf, Noah;Villacampa, Alicia;Manzano, Aranzazu;Herranz, Raul;Davin, Laurence B.;Lewis, Norman G.;Perera, Imara;Wolverton, Chris;Gupta, Parul;Jaiswal, Pankaj;Reinsch, Sigrid S.;Wyatt, Sarah;Gilroy, Simon
通讯作者：
Gilroy, Simon
影响因子：
14.9
作者：
Monaco MK;Stein J;Naithani S;Wei S;Dharmawardhana P;Kumari S;Amarasinghe V;Youens-Clark K;Thomason J;Preece J;Pasternak S;Olson A;Jiao Y;Lu Z;Bolser D;Kerhornou A;Staines D;Walts B;Wu G;D'Eustachio P;Haw R;Croft D;Kersey PJ;Stein L;Jaiswal P;Ware D
通讯作者：
Ware D
OsPIN2 的过度表达通过抑制 OsLAZY1 导致分蘖数量增加、角度增加和株高缩短
影响因子：
13.8
作者：
Chen, Yingnan;Fan, Xiaorong;Xu, Guohua
通讯作者：
Xu, Guohua
影响因子：
14.9
作者：
Dash S;Campbell JD;Cannon EK;Cleary AM;Huang W;Kalberer SR;Karingula V;Rice AG;Singh J;Umale PE;Weeks NT;Wilkey AP;Farmer AD;Cannon SB
通讯作者：
Cannon SB
影响因子：
5.6
作者：
Hsu SK;Tung CW
通讯作者：
Tung CW