Methodologies for the De novo Discovery of Transposable Element Families.
Methodologies for the De novo Discovery of Transposable Element Families.
复制标题
作者：
转座因子家族的发现和鉴定是基因组注释过程中的重要任务。每种生物体的TE文库的仔细策展是必要的，因为每种生物体都暴露于一组独特且通常复杂的TE家族。已经开发了从头方法;然而，开发完整文库的完全自动化和准确的方法仍然难以捉摸。在这篇综述中，我们涵盖了从头TE分析的方法和最新进展。我们还提出了用于评估这些工具的各种方法，并讨论了该领域进一步发展的机会。
The discovery and characterization of transposable element (TE) families are crucial tasks in the process of genome annotation. Careful curation of TE libraries for each organism is necessary as each has been exposed to a unique and often complex set of TE families. De novo methods have been developed; however, a fully automated and accurate approach to the development of complete libraries remains elusive. In this review, we cover established methods and recent developments in de novo TE analysis. We also present various methodologies used to assess these tools and discuss opportunities for further advancement of the field.
登录
查看更多内容
影响因子：
64.8
作者：
Zoonomia Consortium
通讯作者：
Zoonomia Consortium
鸟类多样性的密集采样增强了比较基因组学的力量
影响因子：
64.8
作者：
Feng S;Stiller J;Deng Y;Armstrong J;Fang Q;Reeve AH;Xie D;Chen G;Guo C;Faircloth BC;Petersen B;Wang Z;Zhou Q;Diekhans M;Chen W;Andreu-Sánchez S;Margaryan A;Howard JT;Parent C;Pacheco G;Sinding MS;Puetz L;Cavill E;Ribeiro ÂM;Eckhart L;Fjeldså J;Hosner PA;Brumfield RT;Christidis L;Bertelsen MF;Sicheritz-Ponten T;Tietze DT;Robertson BC;Song G;Borgia G;Claramunt S;Lovette IJ;Cowen SJ;Njoroge P;Dumbacher JP;Ryder OA;Fuchs J;Bunce M;Burt DW;Cracraft J;Meng G;Hackett SJ;Ryan PG;Jønsson KA;Jamieson IG;da Fonseca RR;Braun EL;Houde P;Mirarab S;Suh A;Hansson B;Ponnikas S;Sigeman H;Stervander M;Frandsen PB;van der Zwan H;van der Sluis R;Visser C;Balakrishnan CN;Clark AG;Fitzpatrick JW;Bowman R;Chen N;Cloutier A;Sackton TB;Edwards SV;Foote DJ;Shakya SB;Sheldon FH;Vignal A;Soares AER;Shapiro B;González-Solís J;Ferrer-Obiol J;Rozas J;Riutort M;Tigano A;Friesen V;Dalén L;Urrutia AO;Székely T;Liu Y;Campana MG;Corvelo A;Fleischer RC;Rutherford KM;Gemmell NJ;Dussex N;Mouritsen H;Thiele N;Delmore K;Liedvogel M;Franke A;Hoeppner MP;Krone O;Fudickar AM;Milá B;Ketterson ED;Fidler AE;Friis G;Parody-Merino ÁM;Battley PF;Cox MP;Lima NCB;Prosdocimi F;Parchman TL;Schlinger BA;Loiselle BA;Blake JG;Lim HC;Day LB;Fuxjager MJ;Baldwin MW;Braun MJ;Wirthlin M;Dikow RB;Ryder TB;Camenisch G;Keller LF;DaCosta JM;Hauber ME;Louder MIM;Witt CC;McGuire JA;Mudge J;Megna LC;Carling MD;Wang B;Taylor SA;Del-Rio G;Aleixo A;Vasconcelos ATR;Mello CV;Weir JT;Haussler D;Li Q;Yang H;Wang J;Lei F;Rahbek C;Gilbert MTP;Graves GR;Jarvis ED;Paten B;Zhang G
通讯作者：
Zhang G
影响因子：
4.9
作者：
Bao W;Kojima KK;Kohany O
通讯作者：
Kohany O
本地排序，全球思考：达尔文生命之树项目。
DOI：
10.1073/pnas.2115642118
发表时间：
2022-01-25
影响因子：
11.1
作者：
Darwin Tree of Life Project Consortium
通讯作者：
Darwin Tree of Life Project Consortium
使用多个测序技术对转座元素插入的全面识别。
影响因子：
16.6
作者：
Chu C;Borges-Monroy R;Viswanadham VV;Lee S;Li H;Lee EA;Park PJ
通讯作者：
Park PJ