A consensus map of rapeseed (Brassica napus L.) based on diversity array technology markers: applications in genetic dissection of qualitative and quantitative traits.
A consensus map of rapeseed (Brassica napus L.) based on diversity array technology markers: applications in genetic dissection of qualitative and quantitative traits.
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基于多样性阵列技术标记的油菜籽共识图谱：在定性和定量性状遗传解析中的应用
DOI：
10.1186/1471-2164-14-277
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发表时间：
2013-04-23
期刊：
影响因子：
4.4
通讯作者：
Lydiate D
中科院分区：
文献类型：
--
作者：
Raman H;Raman R;Kilian A;Detering F;Long Y;Edwards D;Parkin IA;Sharpe AG;Nelson MN;Larkan N;Zou J;Meng J;Aslam MN;Batley J;Cowling WA;Lydiate D
BackgroundDense consensus genetic maps based on high-throughput genotyping platforms are valuable for making genetic gains in Brassica napus through quantitative trait locus identification, efficient predictive molecular breeding, and map-based gene cloning. This report describes the construction of the first B. napus consensus map consisting of a 1,359 anchored array based genotyping platform; Diversity Arrays Technology (DArT), and non-DArT markers from six populations originating from Australia, Canada, China and Europe. We aligned the B. napus DArT sequences with genomic scaffolds from Brassica rapa and Brassica oleracea, and identified DArT loci that showed linkage with qualitative and quantitative loci associated with agronomic traits.ResultsThe integrated consensus map covered a total of 1,987.2 cM and represented all 19 chromosomes of the A and C genomes, with an average map density of one marker per 1.46 cM, corresponding to approximately 0.88 Mbp of the haploid genome. Through in silico physical mapping 2,457 out of 3,072 (80%) DArT clones were assigned to the genomic scaffolds of B. rapa (A genome) and B. oleracea (C genome). These were used to orientate the genetic consensus map with the chromosomal sequences. The DArT markers showed linkage with previously identified non-DArT markers associated with qualitative and quantitative trait loci for plant architecture, phenological components, seed and oil quality attributes, boron efficiency, sucrose transport, male sterility, and race-specific resistance to blackleg disease.ConclusionsThe DArT markers provide increased marker density across the B. napus genome. Most of the DArT markers represented on the current array were sequenced and aligned with the B. rapa and B. oleracea genomes, providing insight into the Brassica A and C genomes. This information can be utilised for comparative genomics and genomic evolution studies. In summary, this consensus map can be used to (i) integrate new generation markers such as SNP arrays and next generation sequencing data; (ii) anchor physical maps to facilitate assembly of B. napus genome sequences; and (iii) identify candidate genes underlying natural genetic variation for traits of interest.
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影响因子：
4.4
作者：
Delourme R;Falentin C;Fomeju BF;Boillot M;Lassalle G;André I;Duarte J;Gauthier V;Lucante N;Marty A;Pauchon M;Pichon JP;Ribière N;Trotoux G;Blanchard P;Rivière N;Martinant JP;Pauquet J
通讯作者：
Pauquet J
影响因子：
--
作者：
Li, Yuanyuan;Shen, Jinxiong;Ma, Chaozhi
通讯作者：
Ma, Chaozhi
影响因子：
5.4
作者：
Endrigkeit, Jessica;Wang, Xingxing;Jung, Christian
通讯作者：
Jung, Christian
影响因子：
5.4
作者：
Li, G;Quiros, CF
通讯作者：
Quiros, CF
影响因子：
2
作者：
Hasan, M;Seyis, F;Snowdon, RJ
通讯作者：
Snowdon, RJ