Hairpin-like fluorescent probe for imaging of NF-κB transcription factor activity.
Hairpin-like fluorescent probe for imaging of NF-κB transcription factor activity.
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DOI：
10.1021/bc100553e
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发表时间：
2011-04-20
影响因子：
4.7
通讯作者：
Bogdanov, Alexei, Jr.
中科院分区：
文献类型：
--
作者：
Metelev, Valeri;Zhang, Surong;Tabatadze, David;Bogdanov, Alexei, Jr.
Three oligodeoxyribonucleotides (ODN) covalently labeled with near-infrared (NIR) fluorochromes were synthesized and characterized with a goal of comparing in vitro a hairpin-based and a duplex-based FRET probe designed for the detection of human recombinant NF-κB p50/p65 heterodimer binding to DNA. Using deoxyguanosine phosphoroamidite with a phosphorus-linked aminoethylene (diethylene glycol) hydrophilic linker, we synthesized ODNs with internucleoside reactive sites. The hairpin loop amino linker was modified with IRDye 800CW (FRET acceptor), and the 3′-end was modified with Cy5.5 (FRET donor) using a dithio-linker. To obtain a duplex probe we conjugated Cy5.5 and 800CW to complementary strands at the distance of ten base pairs in the resultant duplex. No quenching of dyes was observed in either probe. The FRET efficiency was higher in the duplex (71%) than in the hairpin (56%) due to a more favorable distance between the donor and acceptor. However, the hairpin design allowed more precise ratiometric measurement of fluorescence intensity changes as a result of NF-κB p50/p65 binding to the probe. We determined that as a result of binding there was a statistically significant increase of fluorescence intensity of Cy5.5 (donor) due to a decrease of FRET if normalized by 800CW intensity measured independently of FRET. We conclude that the hairpin based probe design allows for the synthesis of a dual fluorescence imaging probe that renders signal changes that are simple to interpret and stoichiometrically correct for detecting transcription factor – DNA interactions.
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影响因子：
46.9
作者：
Ntziachristos, V;Ripoll, J;Weissleder, R
通讯作者：
Weissleder, R
影响因子：
4.7
作者：
Metelev, V;Weissleder, R;Bogdanov, A
通讯作者：
Bogdanov, A
影响因子：
4.7
作者：
Zhang, Surong;Bogdanov, Alexei, Jr.
通讯作者：
Bogdanov, Alexei, Jr.
影响因子：
2.4
作者：
FORSTER, T
通讯作者：
FORSTER, T
DOI：
10.1073/pnas.052710999
发表时间：
2002-03-05
影响因子：
11.1
作者：
Ray, P;Pimenta, H;Gambhir, SS
通讯作者：
Gambhir, SS