MetaStorm: A Public Resource for Customizable Metagenomics Annotation.
MetaStorm: A Public Resource for Customizable Metagenomics Annotation.
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DOI：
10.1371/journal.pone.0162442
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发表时间：
2016
期刊：
影响因子：
3.7
通讯作者：
Zhang L
中科院分区：
文献类型：
--
作者：
Arango-Argoty G;Singh G;Heath LS;Pruden A;Xiao W;Zhang L
Metagenomics is a trending research area, calling for the need to analyze large quantities of data generated from next generation DNA sequencing technologies. The need to store, retrieve, analyze, share, and visualize such data challenges current online computational systems. Interpretation and annotation of specific information is especially a challenge for metagenomic data sets derived from environmental samples, because current annotation systems only offer broad classification of microbial diversity and function. Moreover, existing resources are not configured to readily address common questions relevant to environmental systems. Here we developed a new online user-friendly metagenomic analysis server called MetaStorm (http://bench.cs.vt.edu/MetaStorm/), which facilitates customization of computational analysis for metagenomic data sets. Users can upload their own reference databases to tailor the metagenomics annotation to focus on various taxonomic and functional gene markers of interest. MetaStorm offers two major analysis pipelines: an assembly-based annotation pipeline and the standard read annotation pipeline used by existing web servers. These pipelines can be selected individually or together. Overall, MetaStorm provides enhanced interactive visualization to allow researchers to explore and manipulate taxonomy and functional annotation at various levels of resolution.
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影响因子：
48
作者：
Langmead, Ben;Salzberg, Steven L.
通讯作者：
Salzberg, Steven L.
影响因子：
4.6
作者：
Ghai, Rohit;Mella Hernandez, Claudia;Picazo, Antonio;Megumi Mizuno, Carolina;Ininbergs, Karolina;Diez, Beatriz;Valas, Ruben;DuPont, Christopher L.;McMahon, Katherine D.;Camacho, Antonio;Rodriguez-Valera, Francisco
通讯作者：
Rodriguez-Valera, Francisco
DOI：
10.1007/978-1-4419-7089-3_15
发表时间：
2011-01-01
期刊：
METAGENOMICS OF THE HUMAN BODY
影响因子：
--
作者：
Ehrlich, S. Dusko
通讯作者：
Ehrlich, S. Dusko
影响因子：
56.9
作者：
Gill, Steven R.;Pop, Mihai;Nelson, Karen E.
通讯作者：
Nelson, Karen E.
DOI：
10.1016/j.shpsc.2007.09.001
发表时间：
2007-12-01
期刊：
STUDIES IN HISTORY AND PHILOSOPHY OF SCIENCE PART C-STUDIES IN HISTORY AND PHILOSOPHY OF BIOLOGICAL AND BIOMEDIAL SCIENCES
影响因子：
--
作者：
Dupre, John;O'Malley, Maureen A.
通讯作者：
O'Malley, Maureen A.