NCBI reference sequences (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins.

NCBI reference sequences (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins.
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DOI:
10.1093/nar/gkl842
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发表时间:
2007-01
影响因子:
14.9
通讯作者:
Maglott DR
Maglott DR
中科院分区:
生物学2区
文献类型:
--
作者:
Pruitt KD;Tatusova T;Maglott DR

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NCBI的参考序列(RefSeq)数据库()是代表基因组、转录物和蛋白质的序列的策展的非冗余集合。该数据库包括3774种生物,涵盖原核生物、真核生物和病毒,并记录了2879860种蛋白质(RefSeq版本19)。RefSeq记录整合了来自多个来源的信息,当额外的数据可从这些来源获得时,因此代表了序列及其特征的当前描述。注释包括编码区、保守结构域、tRNA、序列标记位点(STS)、变异、参考文献、基因和蛋白质产品名称以及数据库交叉引用。序列审查和功能添加使用的合作和其他输入从科学界,预测,从GenBank和NCBI工作人员策展传播的组合方法。所有RefSeq记录的格式都得到了验证,并且越来越多的测试被应用于评估序列和注释的质量,特别是在完整基因组序列的背景下。
NCBI's reference sequence (RefSeq) database () is a curated non-redundant collection of sequences representing genomes, transcripts and proteins. The database includes 3774 organisms spanning prokaryotes, eukaryotes and viruses, and has records for 2 879 860 proteins (RefSeq release 19). RefSeq records integrate information from multiple sources, when additional data are available from those sources and therefore represent a current description of the sequence and its features. Annotations include coding regions, conserved domains, tRNAs, sequence tagged sites (STS), variation, references, gene and protein product names, and database cross-references. Sequence is reviewed and features are added using a combined approach of collaboration and other input from the scientific community, prediction, propagation from GenBank and curation by NCBI staff. The format of all RefSeq records is validated, and an increasing number of tests are being applied to evaluate the quality of sequence and annotation, especially in the context of complete genomic sequence.
DOI: 10.1093/nar/gki046
发表时间: 2005-01-01
影响因子: 14.9
作者:
Drysdale RA;Crosby MA;FlyBase Consortium
通讯作者: FlyBase Consortium
DOI: 10.1093/bioinformatics/15.7.536
发表时间: 1999-07-01
期刊: BIOINFORMATICS
影响因子: 5.8
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Tatusova, TA;Karsch-Mizrachi, I;Ostell, JA
通讯作者: Ostell, JA
DOI: 10.1093/nar/gkj085
发表时间: 2006-01-01
影响因子: 14.9
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DOI: 10.1093/nar/gkg076
发表时间: 2003-01-01
影响因子: 14.9
作者:
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DOI: 10.1093/nar/gkj061
发表时间: 2006-01-01
影响因子: 14.9
作者:
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通讯作者: Sternberg, Paul W.