Sequence of mouse hepatitis virus A59 mRNA 2: indications for RNA recombination between coronaviruses and influenza C virus.

Sequence of mouse hepatitis virus A59 mRNA 2: indications for RNA recombination between coronaviruses and influenza C virus.
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DOI:
10.1016/0042-6822(88)90512-0
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发表时间:
1988-10
期刊:
影响因子:
3.7
通讯作者:
Spaan WJ
Spaan WJ
中科院分区:
医学3区
文献类型:
--
作者:
Luytjes W;Bredenbeek PJ;Noten AF;Horzinek MC;Spaan WJ

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测定了冠状病毒MHV-A59基因2区的核苷酸序列。预测了两个开放阅读框(ORF):ORF1可能编码一个261个氨基酸的蛋白质;它的氨基酸序列包含指示核苷酸结合特性的元素。ORF2编码413个氨基酸的蛋白质,缺少翻译起始密码子,因此很可能是假基因。ORF2的氨基酸序列与C型流感病毒的HA1血凝素序列有30%的同源性。ORF2上游的一小段核苷酸与MHC I类核苷酸序列有83%的同源性。我们讨论了这两种相似性是重组的结果的可能性,并提出了ORF2的获得和随后的失活的模型;该模型也适用于与MHV-A59相关的冠状病毒,我们预计ORF2在其中仍然具有功能。
The nucleotide sequence of the unique region of coronavirus MHV-A59 mRNA 2 has been determined. Two open reading frames (ORF) are predicted: ORF1 potentially encodes a protein of 261 amino acids; its amino acid sequence contains elements which indicate nucleotide binding properties. ORF2 predicts a 413 amino acids protein; it lacks a translation initiation codon and is therefore probably a pseudogene. The amino acid sequence of ORF2 shares 30% homology with the HA1 hemagglutinin sequence of influenza C virus. A short stretch of nucleotides immediately upstream of ORF2 shares 83% homology with the MHC class I nucleotide sequences. We discuss the possibilitythat both similarities are the result of recombinations and present a model for the acquisition and the subsequent inactivation of ORF2; the model applies also to MHV-A59-related coronaviruses in which we expect ORF2 to be still functional.
DOI: 10.1016/0042-6822(87)90293-5
发表时间: 1987-04
期刊: Virology
影响因子: 3.7
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