Transcriptome Profiling of the Pineapple under Low Temperature to Facilitate Its Breeding for Cold Tolerance.
Transcriptome Profiling of the Pineapple under Low Temperature to Facilitate Its Breeding for Cold Tolerance.
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菠萝 WRKY 基因家族的全基因组研究：发育和胁迫过程中的进化和表达谱
DOI：
10.1371/journal.pone.0163315
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发表时间：
2016
期刊：
影响因子：
3.7
通讯作者：
He Y
中科院分区：
文献类型：
--
作者：
Chen C;Zhang Y;Xu Z;Luan A;Mao Q;Feng J;Xie T;Gong X;Wang X;Chen H;He Y
The pineapple (Ananas comosus) is cold sensitive. Most cultivars are injured during winter periods, especially in sub-tropical regions. There is a lack of molecular information on the pineapple’s response to cold stress. In this study, high-throughput transcriptome sequencing and gene expression analysis were performed on plantlets of a cold-tolerant genotype of the pineapple cultivar ‘Shenwan’ before and after cold treatment. A total of 1,186 candidate cold responsive genes were identified, and their credibility was confirmed by RT-qPCR. Gene set functional enrichment analysis indicated that genes related to cell wall properties, stomatal closure and ABA and ROS signal transduction play important roles in pineapple cold tolerance. In addition, a protein association network of CORs (cold responsive genes) was predicted, which could serve as an entry point to dissect the complex cold response network. Our study found a series of candidate genes and their association network, which will be helpful to cold stress response studies and pineapple breeding for cold tolerance.
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影响因子：
30.8
作者：
Ming R;VanBuren R;Wai CM;Tang H;Schatz MC;Bowers JE;Lyons E;Wang ML;Chen J;Biggers E;Zhang J;Huang L;Zhang L;Miao W;Zhang J;Ye Z;Miao C;Lin Z;Wang H;Zhou H;Yim WC;Priest HD;Zheng C;Woodhouse M;Edger PP;Guyot R;Guo HB;Guo H;Zheng G;Singh R;Sharma A;Min X;Zheng Y;Lee H;Gurtowski J;Sedlazeck FJ;Harkess A;McKain MR;Liao Z;Fang J;Liu J;Zhang X;Zhang Q;Hu W;Qin Y;Wang K;Chen LY;Shirley N;Lin YR;Liu LY;Hernandez AG;Wright CL;Bulone V;Tuskan GA;Heath K;Zee F;Moore PH;Sunkar R;Leebens-Mack JH;Mockler T;Bennetzen JL;Freeling M;Sankoff D;Paterson AH;Zhu X;Yang X;Smith JA;Cushman JC;Paull RE;Yu Q
通讯作者：
Yu Q
DOI：
10.1093/bioinformatics/bts565
发表时间：
2012-12-01
期刊：
Bioinformatics (Oxford, England)
影响因子：
--
作者：
Fu L;Niu B;Zhu Z;Wu S;Li W
通讯作者：
Li W
影响因子：
4.4
作者：
Cheng C;Yun KY;Ressom HW;Mohanty B;Bajic VB;Jia Y;Yun SJ;de los Reyes BG
通讯作者：
de los Reyes BG
影响因子：
5.6
作者：
Bai, Bin;Wu, Jun;Deng, Qi-Yun
通讯作者：
Deng, Qi-Yun
影响因子：
6.9
作者：
DROZDOV, SN;TITOV, AF;KRITENKO, SP
通讯作者：
KRITENKO, SP