Gene Ontology annotations and resources.

Gene Ontology annotations and resources.
复制标题

DOI:
10.1093/nar/gks1050
复制
发表时间:
2013-01
影响因子:
14.9
通讯作者:
Westerfield M
Westerfield M
中科院分区:
生物学2区
文献类型:
--
作者:
Gene Ontology Consortium;Blake JA;Dolan M;Drabkin H;Hill DP;Li N;Sitnikov D;Bridges S;Burgess S;Buza T;McCarthy F;Peddinti D;Pillai L;Carbon S;Dietze H;Ireland A;Lewis SE;Mungall CJ;Gaudet P;Chrisholm RL;Fey P;Kibbe WA;Basu S;Siegele DA;McIntosh BK;Renfro DP;Zweifel AE;Hu JC;Brown NH;Tweedie S;Alam-Faruque Y;Apweiler R;Auchinchloss A;Axelsen K;Bely B;Blatter M-;Bonilla C;Bouguerleret L;Boutet E;Breuza L;Bridge A;Chan WM;Chavali G;Coudert E;Dimmer E;Estreicher A;Famiglietti L;Feuermann M;Gos A;Gruaz-Gumowski N;Hieta R;Hinz C;Hulo C;Huntley R;James J;Jungo F;Keller G;Laiho K;Legge D;Lemercier P;Lieberherr D;Magrane M;Martin MJ;Masson P;Mutowo-Muellenet P;O'Donovan C;Pedruzzi I;Pichler K;Poggioli D;Porras Millán P;Poux S;Rivoire C;Roechert B;Sawford T;Schneider M;Stutz A;Sundaram S;Tognolli M;Xenarios I;Foulgar R;Lomax J;Roncaglia P;Khodiyar VK;Lovering RC;Talmud PJ;Chibucos M;Giglio MG;Chang H-;Hunter S;McAnulla C;Mitchell A;Sangrador A;Stephan R;Harris MA;Oliver SG;Rutherford K;Wood V;Bahler J;Lock A;Kersey PJ;McDowall DM;Staines DM;Dwinell M;Shimoyama M;Laulederkind S;Hayman T;Wang S-;Petri V;Lowry T;D'Eustachio P;Matthews L;Balakrishnan R;Binkley G;Cherry JM;Costanzo MC;Dwight SS;Engel SR;Fisk DG;Hitz BC;Hong EL;Karra K;Miyasato SR;Nash RS;Park J;Skrzypek MS;Weng S;Wong ED;Berardini TZ;Huala E;Mi H;Thomas PD;Chan J;Kishore R;Sternberg P;Van Auken K;Howe D;Westerfield M

文献摘要

参考文献

被引文献

相似文献

基因本体论(GO)联盟(GOC,http://www.geneontology.org)是一个基于社区的生物信息学资源,通过使用结构化的,受控的词汇表对基因产物功能进行分类。在过去的一年里,GOC已经实施了几个过程,以提高GO注释的数量,质量和特异性。首先,基于文献的手动注释的数量以越来越快的速度增长。第二,作为一个新的“系统发育注释”过程的结果,手动审查,同源性为基础的注释正在成为广泛的物种。第三,GO注释的质量已经通过针对由不同注释组沉积的GO注释的简化过程和自动化质量检查而得到提高。第四,通过使用自动推理工具,本体本身的一致性和正确性得到了提高。最后,GO已经扩大,不仅通过与专家的重点互动,以涵盖新的生物学领域,而且还捕捉更大的特异性,在所有领域的本体使用工具添加新的组合术语。GOC与其他本体开发人员密切合作,以支持术语的综合使用。GOC通过使用电子邮件列表、社交媒体和基于网络的资源来支持其用户社区。
The Gene Ontology (GO) Consortium (GOC, http://www.geneontology.org) is a community-based bioinformatics resource that classifies gene product function through the use of structured, controlled vocabularies. Over the past year, the GOC has implemented several processes to increase the quantity, quality and specificity of GO annotations. First, the number of manual, literature-based annotations has grown at an increasing rate. Second, as a result of a new ‘phylogenetic annotation’ process, manually reviewed, homology-based annotations are becoming available for a broad range of species. Third, the quality of GO annotations has been improved through a streamlined process for, and automated quality checks of, GO annotations deposited by different annotation groups. Fourth, the consistency and correctness of the ontology itself has increased by using automated reasoning tools. Finally, the GO has been expanded not only to cover new areas of biology through focused interaction with experts, but also to capture greater specificity in all areas of the ontology using tools for adding new combinatorial terms. The GOC works closely with other ontology developers to support integrated use of terminologies. The GOC supports its user community through the use of e-mail lists, social media and web-based resources.
基因本体论:2011年的增强。
DOI: 10.1093/nar/gkr1028
发表时间: 2012-01
影响因子: 14.9
作者:
Gene Ontology Consortium
通讯作者: Gene Ontology Consortium
DOI: 10.1007/s12021-008-9033-y
发表时间: 2008-09
期刊: NEUROINFORMATICS
影响因子: 3
作者:
Gupta, Amarnath;Bug, William;Marenco, Luis;Qian, Xufei;Condit, Christopher;Rangarajan, Arun;Mueller, Hans Michael;Miller, Perry L.;Sanders, Brian;Grethe, Jeffrey S.;Astakhov, Vadim;Shepherd, Gordon;Sternberg, Paul W.;Martone, Maryann E.
通讯作者: Martone, Maryann E.
DOI: 10.1038/nbt1346
发表时间: 2007-11-01
影响因子: 46.9
作者:
Smith, Barry;Ashburner, Michael;Lewis, Suzanna
通讯作者: Lewis, Suzanna
DOI: 10.1186/1471-2105-11-530
发表时间: 2010-10-25
期刊: BMC BIOINFORMATICS
影响因子: 3
作者:
Deegan (nee Clark), Jennifer I.;Dimmer, Emily C.;Mungall, Christopher J.
通讯作者: Mungall, Christopher J.
DOI: 10.1186/gb-2012-13-1-r5
发表时间: 2012-01-31
期刊: Genome biology
影响因子: 12.3
作者:
Mungall CJ;Torniai C;Gkoutos GV;Lewis SE;Haendel MA
通讯作者: Haendel MA