How Can We Define "Optimal Microbiota?": A Comparative Review of Structure and Functions of Microbiota of Animals, Fish, and Plants in Agriculture.
How Can We Define "Optimal Microbiota?": A Comparative Review of Structure and Functions of Microbiota of Animals, Fish, and Plants in Agriculture.
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DOI：
10.3389/fnut.2018.00090
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发表时间：
2018
影响因子：
5
通讯作者：
Pieterse CMJ
中科院分区：
文献类型：
--
作者：
Ikeda-Ohtsubo W;Brugman S;Warden CH;Rebel JMJ;Folkerts G;Pieterse CMJ
所有多细胞生物都受益于它们自己的微生物群，微生物群在维持宿主营养健康和免疫力方面发挥着重要作用。最近，对具有经济重要性的动物、鱼类和植物的微生物群的研究数量正在迅速扩大，人们越来越期望通过微生物群操纵可以提高农业管理的生产力和可持续性。然而，优化微生物群仍然是一项具有挑战性的任务，因为缺乏对优势微生物的了解或微生物群之间的显著差异，反映了采样偏差，不同的农业管理以及育种背景。为了对农业中的微生物群提供一个更广泛的观点，这可以用于定义“最佳微生物群”的标准作为操作的目标，我们在这里总结了目前对动物，鱼类和植物微生物群的知识，重点是细菌群落结构和代谢功能，以及微生物群如何受到驯化，传统农业实践和使用抗菌剂的影响。最后，我们讨论了未来的任务，以确定“最佳微生物群”，这可以改善宿主的生长，营养和免疫力，并减少在农业中使用抗菌剂。
All multicellular organisms benefit from their own microbiota, which play important roles in maintaining the host nutritional health and immunity. Recently, the number of studies on the microbiota of animals, fish, and plants of economic importance is rapidly expanding and there are increasing expectations that productivity and sustainability in agricultural management can be improved by microbiota manipulation. However, optimizing microbiota is still a challenging task because of the lack of knowledge on the dominant microorganisms or significant variations between microbiota, reflecting sampling biases, different agricultural management as well as breeding backgrounds. To offer a more generalized view on microbiota in agriculture, which can be used for defining criteria of “optimal microbiota” as the goal of manipulation, we summarize here current knowledge on microbiota on animals, fish, and plants with emphasis on bacterial community structure and metabolic functions, and how microbiota can be affected by domestication, conventional agricultural practices, and use of antimicrobial agents. Finally, we discuss future tasks for defining “optimal microbiota,” which can improve host growth, nutrition, and immunity and reduce the use of antimicrobial agents in agriculture.
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DOI：
10.1126/science.1198469
发表时间：
2011-01-21
期刊：
Science (New York, N.Y.)
影响因子：
--
作者：
Atarashi K;Tanoue T;Shima T;Imaoka A;Kuwahara T;Momose Y;Cheng G;Yamasaki S;Saito T;Ohba Y;Taniguchi T;Takeda K;Hori S;Ivanov II;Umesaki Y;Itoh K;Honda K
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Honda K
影响因子：
3.3
作者：
Camarinha-Silva, Amelia;Maushammer, Maria;Bennewitz, Joern
通讯作者：
Bennewitz, Joern
影响因子：
30.5
作者：
Ausubel, FM
通讯作者：
Ausubel, FM
影响因子：
64.8
作者：
Bai, Yang;Mueller, Daniel B.;Schulze-Lefert, Paul
通讯作者：
Schulze-Lefert, Paul
DOI：
10.1073/pnas.1219247110
发表时间：
2013-03-19
影响因子：
11.1
作者：
Berry, David;Stecher, Baerbel;Wagner, Michael
通讯作者：
Wagner, Michael