Transcriptome-scale methods for uncovering subcellular RNA localization mechanisms.

Transcriptome-scale methods for uncovering subcellular RNA localization mechanisms.
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DOI:
10.1016/j.bbamcr.2021.119202
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发表时间:
2022-04
期刊:
Biochimica et biophysica acta. Molecular cell research
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在各种系统中,数以千计的 RNA 定位于特定的亚细胞位置。然而,对于绝大多数这些 RNA,其运输的机制尚不清楚。历史上,这些机制是通过费力地测试 RNA 片段指导转录本定位的能力而一次针对单个转录本发现的。最近开发的方法使用高通量测序来分析亚细胞转录组的内容,从而可以同时分析数千个转录本的定位。通过识别多个定位转录本之间的共性,这些方法有可能迅速扩大我们对 RNA 定位机制的理解。
Across a variety of systems, thousands of RNAs are localized to specific subcellular locations. However, for the vast majority of these RNAs, the mechanisms that underlie their transport are unknown. Historically, these mechanisms were uncovered for a single transcript at a time by laboriously testing the ability of RNA fragments to direct transcript localization. Recently developed methods profile the content of subcellular transcriptomes using high-throughput sequencing, allowing the analysis of the localization of thousands of transcripts at once. By identifying commonalities shared among multiple localized transcripts, these methods have the potential to rapidly expand our understanding of RNA localization mechanisms.
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