Community cyberinfrastructure for Advanced Microbial Ecology Research and Analysis: the CAMERA resource.
Community cyberinfrastructure for Advanced Microbial Ecology Research and Analysis: the CAMERA resource.
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DOI：
10.1093/nar/gkq1102
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发表时间：
2011-01
影响因子：
14.9
通讯作者：
Wooley J
中科院分区：
文献类型：
--
作者：
Sun S;Chen J;Li W;Altintas I;Lin A;Peltier S;Stocks K;Allen EE;Ellisman M;Grethe J;Wooley J
用于高级微生物生态学研究与分析的社区网络基础设施（CAMERA，http://camera.calit2.net/）是一个数据库及相关的计算基础设施，它通过一个先进的基于网络的分析门户，为微生物生物学数据的存储、定位、分析、可视化及共享提供了一个单一系统。CAMERA在一个具有语义感知的环境中收集与环境宏基因组数据集相关的元数据并将其与注释相链接，允许用户针对数据库编写表达性的语义查询。为满足研究社区的需求，用户能够查询诸如栖息地、样本类型、时间、位置以及其他环境物理化学参数等元数据类别。CAMERA符合基因组标准协会（GSC）颁布的标准，并在GSC中发挥作用，扩展宏基因组数据和元数据的内容与格式标准以及向CAMERA知识库提交的标准。为确保广泛、便捷地获取数据和注释，CAMERA还提供数据提交工具，允许研究人员将数据共享并转发到其他宏基因组学网站以及像GenBank这样的社区数据档案库。它有多个接口，便于提交大型或复杂的数据集，并支持样本的预登记以便测序。CAMERA集成了越来越多的工具和查看器，用于查询、分析、注释和比较宏基因组和基因组数据。
The Community Cyberinfrastructure for Advanced Microbial Ecology Research and Analysis (CAMERA, http://camera.calit2.net/) is a database and associated computational infrastructure that provides a single system for depositing, locating, analyzing, visualizing and sharing data about microbial biology through an advanced web-based analysis portal. CAMERA collects and links metadata relevant to environmental metagenome data sets with annotation in a semantically-aware environment allowing users to write expressive semantic queries against the database. To meet the needs of the research community, users are able to query metadata categories such as habitat, sample type, time, location and other environmental physicochemical parameters. CAMERA is compliant with the standards promulgated by the Genomic Standards Consortium (GSC), and sustains a role within the GSC in extending standards for content and format of the metagenomic data and metadata and its submission to the CAMERA repository. To ensure wide, ready access to data and annotation, CAMERA also provides data submission tools to allow researchers to share and forward data to other metagenomics sites and community data archives such as GenBank. It has multiple interfaces for easy submission of large or complex data sets, and supports pre-registration of samples for sequencing. CAMERA integrates a growing list of tools and viewers for querying, analyzing, annotating and comparing metagenome and genome data.
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影响因子：
4.3
作者：
Wooley JC;Godzik A;Friedberg I
通讯作者：
Friedberg I
影响因子：
14.9
作者：
Pruesse E;Quast C;Knittel K;Fuchs BM;Ludwig W;Peplies J;Glöckner FO
通讯作者：
Glöckner FO
影响因子：
2
作者：
Ludascher, Bertram;Altintas, Ilkay;Zhao, Yang
通讯作者：
Zhao, Yang
影响因子：
14.9
作者：
Finn RD;Mistry J;Tate J;Coggill P;Heger A;Pollington JE;Gavin OL;Gunasekaran P;Ceric G;Forslund K;Holm L;Sonnhammer EL;Eddy SR;Bateman A
通讯作者：
Bateman A
影响因子：
3
作者：
Meyer, F.;Paarmann, D.;Edwards, R. A.
通讯作者：
Edwards, R. A.