Ontology for the asexual development and anatomy of the colonial chordate Botryllus schlosseri.
Ontology for the asexual development and anatomy of the colonial chordate Botryllus schlosseri.
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DOI：
10.1371/journal.pone.0096434
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发表时间：
2014
期刊：
影响因子：
3.7
通讯作者：
Dauga D
中科院分区：
文献类型：
--
作者：
Manni L;Gasparini F;Hotta K;Ishizuka KJ;Ricci L;Tiozzo S;Voskoboynik A;Dauga D
本体提供了整合信息的重要资源。对于发育生物学和比较解剖学研究，物种本体用于形式化和注释与解剖结构、谱系和发育时间相关的数据。在这里，我们构建了第一个关于两侧对称动物（殖民地被囊动物 Botryllus schlosseri）的解剖学和无性发育（胚芽发生）的本体论。被囊动物，如灰霉属，是非脊椎动物，也是唯一既能有性繁殖又能无性繁殖的脊索动物分类群。它们的蝌蚪幼虫阶段具有所有脊索动物的结构特征，即脊索、背神经管和鳃裂。幼虫定居并变态为独居或群居的个体。后者有性繁殖和无性繁殖，这两种繁殖模式导致基本上相同的成年身体计划。 Botryllus schlosseri 发育和解剖学本体论 (BODA) 将促进两种发育类型之间的比较。 BODA 使用 Open Biomedical Ontologies Foundry 定义的规则。它基于对该生物体的解剖学、胚芽发生和再生的研究。 BODA 功能允许用户轻松搜索和识别群体中的解剖结构，定义发育阶段，并在整个无性发育过程中跟踪感兴趣的组织和/或器官的形态发生事件。我们邀请科学界使用此资源作为 B. schlosseri 的解剖学和发育本体论的参考，并鼓励提出更新和改进的建议。
Ontologies provide an important resource to integrate information. For developmental biology and comparative anatomy studies, ontologies of a species are used to formalize and annotate data that are related to anatomical structures, their lineage and timing of development. Here, we have constructed the first ontology for anatomy and asexual development (blastogenesis) of a bilaterian, the colonial tunicate Botryllus schlosseri. Tunicates, like Botryllus schlosseri, are non-vertebrates and the only chordate taxon species that reproduce both sexually and asexually. Their tadpole larval stage possesses structures characteristic of all chordates, i.e. a notochord, a dorsal neural tube, and gill slits. Larvae settle and metamorphose into individuals that are either solitary or colonial. The latter reproduce both sexually and asexually and these two reproductive modes lead to essentially the same adult body plan. The Botryllus schlosseri Ontology of Development and Anatomy (BODA) will facilitate the comparison between both types of development. BODA uses the rules defined by the Open Biomedical Ontologies Foundry. It is based on studies that investigate the anatomy, blastogenesis and regeneration of this organism. BODA features allow the users to easily search and identify anatomical structures in the colony, to define the developmental stage, and to follow the morphogenetic events of a tissue and/or organ of interest throughout asexual development. We invite the scientific community to use this resource as a reference for the anatomy and developmental ontology of B. schlosseri and encourage recommendations for updates and improvements.
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影响因子：
4.9
作者：
Cooper L;Walls RL;Elser J;Gandolfo MA;Stevenson DW;Smith B;Preece J;Athreya B;Mungall CJ;Rensing S;Hiss M;Lang D;Reski R;Berardini TZ;Li D;Huala E;Schaeffer M;Menda N;Arnaud E;Shrestha R;Yamazaki Y;Jaiswal P
通讯作者：
Jaiswal P
DOI：
10.1093/bioinformatics/btt266
发表时间：
2013-07-01
期刊：
Bioinformatics (Oxford, England)
影响因子：
--
作者：
Harris MA;Lock A;Bähler J;Oliver SG;Wood V
通讯作者：
Wood V
影响因子：
64.8
作者：
Delsuc, F;Brinkmann, H;Philippe, H
通讯作者：
Philippe, H
影响因子：
3.6
作者：
Ballarin, Loriano;Menin, Adams;Cima, Francesca
通讯作者：
Cima, Francesca
DOI：
10.1002/jez.b.21431
发表时间：
2011-12-15
影响因子：
2.2
作者：
Gasparini, Fabio;Shimeld, Sebastian M.;Manni, Lucia
通讯作者：
Manni, Lucia