RNA analysis of B cell lines arrested at defined stages of differentiation allows for an approximation of gene expression patterns during B cell development

RNA analysis of B cell lines arrested at defined stages of differentiation allows for an approximation of gene expression patterns during B cell development
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对在特定分化阶段停滞的 B 细胞系进行 RNA 分析,可以近似了解 B 细胞发育过程中的基因表达模式

DOI:
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发表时间:
2003
影响因子:
5.5
通讯作者:
M. Sigvardsson
M. Sigvardsson
中科院分区:
医学3区
文献类型:
--
作者:
P. Tsapogas;T. Breslin;S. Bilke;Anna Lagergren;R. Månsson;D. Liberg;C. Peterson;M. Sigvardsson

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从骨髓干细胞发育成成熟的B淋巴细胞是一个高度有序的过程,涉及具有确定特征和基因表达模式的阶段。为了更深入地了解这一过程的分子遗传学,我们使用Affytron ™微阵列对一组代表B细胞发育特定阶段的小鼠B谱系细胞系进行了RNA表达分析。根据细胞先前定义的表型特征对细胞进行分组,并建立每组细胞系的基因表达模式。数据表明,代表确定阶段的细胞系通常在总体表达谱中呈现出高度相似性。使用基于dCHIP的定量比较或基于存在/不存在的概率状态分析,可以将许多基因鉴定为以受限模式表达。这些实验为B细胞发育过程中的基因表达提供了一个模型,并且正确鉴定的许多控制基因的表达模式表明,一系列细胞系可以是阐明复杂分化过程的分子遗传学的有用工具。
The development of a mature B lymphocyte from a bone marrow stem cell is a highly ordered process involving stages with defined features and gene expression patterns. To obtain a deeper understanding of the molecular genetics of this process, we have performed RNA expression analysis of a set of mouse B lineage cell lines representing defined stages of B cell development using Affymetrix™ microarrays. The cells were grouped based on their previously defined phenotypic features, and a gene expression pattern for each group of cell lines was established. The data indicated that the cell lines representing a defined stage generally presented a high similarity in overall expression profiles. Numerous genes could be identified as expressed with a restricted pattern using dCHIP‐based, quantitative comparisons or presence/absence‐based, probabilistic state analysis. These experiments provide a model for gene expression during B cell development, and the correctly identified expression patterns of a number of control genes suggest that a series of cell lines can be useful tools in the elucidation of the molecular genetics of a complex differentiation process.
DOI: 10.1016/s1074-7613(00)80591-9
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