SoyFN: a knowledge database of soybean functional networks.
SoyFN: a knowledge database of soybean functional networks.
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SoyFN：大豆功能网络知识数据库
DOI：
10.1093/database/bau019
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发表时间：
2014
期刊：
影响因子：
--
通讯作者：
Liu Y
中科院分区：
文献类型：
--
作者：
Xu Y;Guo M;Liu X;Wang C;Liu Y
Many databases for soybean genomic analysis have been built and made publicly available, but few of them contain knowledge specifically targeting the omics-level gene–gene, gene–microRNA (miRNA) and miRNA–miRNA interactions. Here, we present SoyFN, a knowledge database of soybean functional gene networks and miRNA functional networks. SoyFN provides user-friendly interfaces to retrieve, visualize, analyze and download the functional networks of soybean genes and miRNAs. In addition, it incorporates much information about KEGG pathways, gene ontology annotations and 3′-UTR sequences as well as many useful tools including SoySearch, ID mapping, Genome Browser, eFP Browser and promoter motif scan. SoyFN is a schema-free database that can be accessed as a Web service from any modern programming language using a simple Hypertext Transfer Protocol call. The Web site is implemented in Java, JavaScript, PHP, HTML and Apache, with all major browsers supported. We anticipate that this database will be useful for members of research communities both in soybean experimental science and bioinformatics. Database URL: http://nclab.hit.edu.cn/SoyFN
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影响因子：
4.3
作者：
Guan Y;Myers CL;Lu R;Lemischka IR;Bult CJ;Troyanskaya OG
通讯作者：
Troyanskaya OG
影响因子：
12.3
作者：
Peña-Castillo L;Tasan M;Myers CL;Lee H;Joshi T;Zhang C;Guan Y;Leone M;Pagnani A;Kim WK;Krumpelman C;Tian W;Obozinski G;Qi Y;Mostafavi S;Lin GN;Berriz GF;Gibbons FD;Lanckriet G;Qiu J;Grant C;Barutcuoglu Z;Hill DP;Warde-Farley D;Grouios C;Ray D;Blake JA;Deng M;Jordan MI;Noble WS;Morris Q;Klein-Seetharaman J;Bar-Joseph Z;Chen T;Sun F;Troyanskaya OG;Marcotte EM;Xu D;Hughes TR;Roth FP
通讯作者：
Roth FP
影响因子：
14.9
作者：
Kozomara A;Griffiths-Jones S
通讯作者：
Griffiths-Jones S
影响因子：
12.3
作者：
Kim WK;Krumpelman C;Marcotte EM
通讯作者：
Marcotte EM
影响因子：
14.9
作者：
Grant D;Nelson RT;Cannon SB;Shoemaker RC
通讯作者：
Shoemaker RC