The UCSC Genome Browser database: extensions and updates 2013.

The UCSC Genome Browser database: extensions and updates 2013.
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DOI:
10.1093/nar/gks1048
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发表时间:
2013-01
影响因子:
14.9
通讯作者:
Kent WJ
Kent WJ
中科院分区:
生物学2区
文献类型:
--
作者:
Meyer LR;Zweig AS;Hinrichs AS;Karolchik D;Kuhn RM;Wong M;Sloan CA;Rosenbloom KR;Roe G;Rhead B;Raney BJ;Pohl A;Malladi VS;Li CH;Lee BT;Learned K;Kirkup V;Hsu F;Heitner S;Harte RA;Haeussler M;Guruvadoo L;Goldman M;Giardine BM;Fujita PA;Dreszer TR;Diekhans M;Cline MS;Clawson H;Barber GP;Haussler D;Kent WJ

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加利福尼亚大学圣克鲁斯大学(UCSC)基因组浏览器(http://genome.ucsc.edu)在线公众访问了不断增长的基因组序列和注释数据库的浏览器是多种生物的。可视化,比较,分析和共享公共可用和用户生成的基因组数据集。在过去的一年中,已经添加通过贡献者或最新的人类参考基因组。数据库,以前在该期刊的数据库问题中列出了数据库。
The University of California Santa Cruz (UCSC) Genome Browser (http://genome.ucsc.edu) offers online public access to a growing database of genomic sequence and annotations for a wide variety of organisms. The Browser is an integrated tool set for visualizing, comparing, analysing and sharing both publicly available and user-generated genomic datasets. As of September 2012, genomic sequence and a basic set of annotation ‘tracks’ are provided for 63 organisms, including 26 mammals, 13 non-mammal vertebrates, 3 invertebrate deuterostomes, 13 insects, 6 worms, yeast and sea hare. In the past year 19 new genome assemblies have been added, and we anticipate releasing another 28 in early 2013. Further, a large number of annotation tracks have been either added, updated by contributors or remapped to the latest human reference genome. Among these are an updated UCSC Genes track for human and mouse assemblies. We have also introduced several features to improve usability, including new navigation menus. This article provides an update to the UCSC Genome Browser database, which has been previously featured in the Database issue of this journal.
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发表时间: 2011-04
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