Complete mitochondrial genome of the Pacific limpet Cellana nigrolineata (Gastropoda: Patellogastropoda) determined by shotgun sequencing using the Illumina NGS platform.
Complete mitochondrial genome of the Pacific limpet Cellana nigrolineata (Gastropoda: Patellogastropoda) determined by shotgun sequencing using the Illumina NGS platform.
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DOI：
10.1080/23802359.2021.1934579
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发表时间：
2021-06-03
期刊：
影响因子：
--
通讯作者：
Setiamarga DHE
中科院分区：
文献类型：
--
作者：
Nakashima S;Shimizu M;Hirota K;Hiruta SF;Nagisa N;Fujita T;Sasaki T;Setiamarga DHE
太平洋帽贝Cellana nigrolineata是日本潮间带最常见的帽贝之一。在这里，我们报告了该物种个体标本的完整有丝分裂基因组序列，该标本于2018年在日本和歌山Gobo市的Nada海滩的潮间带岩石海滩（33.8316 N，135.1751 E）中采集。使用NGS Illumina MiSeq平台通过鸟枪测序法测定序列。C. nigrolineata与以前报道的同类C. radiata，显示了典型的Nacellidae和后生动物的有丝分裂基因组结构。有丝分裂基因组的所有37个基因都包含在其16，153 bp中，其中一个控制区位于tRNA-Cys和tRNA-Gly基因之间。为了明确C. nigrolineata腹足类，数据集，包括10 patellogastropod，10 nonpatellogastropod腹足类，和四个外类群的有丝分裂基因组被用于最大似然推断。虽然有一些例外，但由此产生的单系发生支持了传统上接受的腹足纲亚类的单系性，从而证实了C。nigrolineata在Patellogastropoda。
The Pacific limpet Cellana nigrolineata is one of the most commonly found limpets in the intertidal shores of Japan. Here, we report the full mitogenome sequence of an individual specimen of the species, which was collected from the intertidal rocky beach in the Nada beach of Gobo City, Wakayama, Japan (33.8316 N, 135.1751 E), in 2018. The sequence was determined by the shotgun sequencing method using the NGS Illumina MiSeq platform. The genomic structure of C. nigrolineata is the same as the previously reported congener, C. radiata, which shows a representative Nacellidae and metazoan mitogenomic structures. The mitogenome has all of its 37 genes included in its 16,153 bp, with one control region located between the tRNA-Cys and tRNA-Gly genes. In order to clarify the phylogenetic position of C. nigrolineata in Gastropoda, a data set including the mitogenomes of 10 patellogastropods, 10 non-patellogastropod gastropods, and four outgroups were used in maximum likelihood inferences. Although with some exceptions, the resulting phylogeny supported the monophylies of traditionally accepted gastropod subclasses, and thus confirms the position of C. nigrolineata in Patellogastropoda.
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