Future-proofing the Cenozoic macroperforate planktonic foraminifera phylogeny of Aze & others (2011).
Future-proofing the Cenozoic macroperforate planktonic foraminifera phylogeny of Aze & others (2011).
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DOI：
10.1371/journal.pone.0204625
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发表时间：
2018
期刊：
影响因子：
3.7
通讯作者：
Wade BS
中科院分区：
文献类型：
--
作者：
Fordham BG;Aze T;Haller C;Zehady AK;Pearson PN;Ogg JG;Wade BS
阿泽等人的独特宏观进化数据集已被转移到TimeScale Creator可视化平台上，同时尽可能保留其形态物种和谱系进化树的原始未修订内容。这是一个“更正版本”（而不是修订版），可以作为一个正在进行的历史案例，因为它现在是更新与未来的时间尺度。宏观进化和生物地层学社区现在都配备了一个持久的新生代macroecological有孔虫形态种和谱系的系统发育数据库，图形和内容都可以可视化在一起。保持树木的流通性的关键是对地层范围来源的时间尺度的规范;这些尺度然后在校准系列中定位范围日期。一些范围或其来源经历了大多数轻微的更正或修正。谱系树和形态种树之间的联系已经被引入，以提高树内时间的一致性和透明度。此外，鉴于随之而来的误解，这里进一步阐述了阿泽和其他人对形态种和谱系概念的双重运用。树上显示的功能包括范围扩展或祖先-后代建议支持程度的其他类别的线条样式选项;这些选项已应用于少数实例，以鼓励将来捕获更细微的数据。除了在两棵树上标记生态群和形态群之外，还可以将属标签附加到形态种树上，以警告多系形态属，并解码谱系代码以便于识别。然而，正是鼠标悬停弹出窗口提供了在树中嵌入支持信息的最大机会。它们包括详细的地层范围及其重新校准步骤，相对于标准的南极有孔虫环带的位置，以及作为基准的应用，以及形态种和谱系之间的相互列表，便于追踪其相互关联的内容。原始数据集的详细说明已被捕获在关系数据库中，该数据库本身可以被视为资源，并且通过查询和编程，用于生成TimeScale Creator数据包。
The unique macroevolutionary dataset of Aze & others has been transferred onto the TimeScale Creator visualisation platform while, as much as practicable, preserving the original unrevised content of its morphospecies and lineage evolutionary trees. This is a “Corrected Version” (not a revision), which can serve as an on-going historical case example because it is now updatable with future time scales. Both macroevolutionary and biostratigraphic communities are now equipped with an enduring phylogenetic database of Cenozoic macroperforate planktonic foraminiferal morphospecies and lineages for which both graphics and content can be visualised together. Key to maintaining the currency of the trees has been specification of time scales for sources of stratigraphic ranges; these scales then locate the range dates within the calibration series. Some ranges or their sources have undergone mostly minor corrections or amendments. Links between lineage and morphospecies trees have been introduced to improve consistency and transparency in timing within the trees. Also, Aze & others’ dual employment of morphospecies and lineage concepts is further elaborated here, given misunderstandings that have ensued. Features displayed on the trees include options for line styles for additional categories for range extensions or degrees of support for ancestor–descendant proposals; these have been applied to a small number of instances as an encouragement to capture more nuanced data in the future. In addition to labeling of eco- and morpho-groups on both trees, genus labels can be attached to the morphospecies tree to warn of polyphyletic morphogenera, and the lineage codes have been decoded to ease their recognition. However, it is the mouse-over pop-ups that provide the greatest opportunity to embed supporting information in the trees. They include details for stratigraphic ranges and their recalibration steps, positions relative to the standard planktonic-foraminiferal zonation, and applications as datums, as well as mutual listings between morphospecies and lineages which ease the tracing of their interrelated contents. The elaboration of the original dataset has been captured in a relational database, which can be considered a resource in itself, and, through queries and programming, serves to generate the TimeScale Creator datapacks.
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影响因子：
1.4
作者：
Arenillas, Ignacio;Arz, Jose A.
通讯作者：
Arz, Jose A.
影响因子：
3.3
作者：
CAIN, AJ
通讯作者：
CAIN, AJ
影响因子：
1.1
作者：
DHONDT, SL
通讯作者：
DHONDT, SL
影响因子：
1.9
作者：
Darling, Kate F.;Wade, Christopher M.
通讯作者：
Wade, Christopher M.
DOI：
10.1073/pnas.0502030102
发表时间：
2005-05-03
影响因子：
11.1
作者：
de Queiroz, K
通讯作者：
de Queiroz, K