The Rice Annotation Project Database (RAP-DB): hub for Oryza sativa ssp. japonica genome information.
The Rice Annotation Project Database (RAP-DB): hub for Oryza sativa ssp. japonica genome information.
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DOI：
10.1093/nar/gkj094
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发表时间：
2006-01-01
影响因子：
14.9
通讯作者：
Sasaki, Takuji
中科院分区：
文献类型：
--
作者：
Ohyanagi, Hajime;Tanaka, Tsuyoshi;Sakai, Hiroaki;Shigemoto, Yasumasa;Yamaguchi, Kaori;Habara, Takuya;Fujii, Yasuyuki;Antonio, Baltazar A.;Nagamura, Yoshiaki;Imanishi, Tadashi;Ikeo, Kazuho;Itoh, Takeshi;Gojobori, Takashi;Sasaki, Takuji
随着水稻基因组测序的完成，需要一个标准化的注释，以便充分利用基因组序列中的信息来理解水稻和其他粮食作物的生物学。日本举行了一次注释大会，目的是对水稻基因组中的所有基因进行注释和手动管理。在这里，我们介绍了水稻注释项目数据库(RAP-DB)，它是为提供对注释数据的访问而开发的。RAP-DB有两种不同类型的注释查看器，BLAST和BLAT搜索，以及其他有用的功能。通过将注释连接到其他水稻基因组学数据，如全长cDNA和Tos17突变系，RAP-DB充当了水稻基因组学的枢纽。所有资源都可以通过访问。
With the completion of the rice genome sequencing, a standardized annotation is necessary so that the information from the genome sequence can be fully utilized in understanding the biology of rice and other cereal crops. An annotation jamboree was held in Japan with the aim of annotating and manually curating all the genes in the rice genome. Here we present the Rice Annotation Project Database (RAP-DB), which has been developed to provide access to the annotation data. The RAP-DB has two different types of annotation viewers, BLAST and BLAT search, and other useful features. By connecting the annotations to other rice genomics data, such as full-length cDNAs and Tos17 mutant lines, the RAP-DB serves as a hub for rice genomics. All of the resources can be accessed through .
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影响因子：
9.8
作者：
Imanishi T;Itoh T;Suzuki Y;O'Donovan C;Fukuchi S;Koyanagi KO;Barrero RA;Tamura T;Yamaguchi-Kabata Y;Tanino M;Yura K;Miyazaki S;Ikeo K;Homma K;Kasprzyk A;Nishikawa T;Hirakawa M;Thierry-Mieg J;Thierry-Mieg D;Ashurst J;Jia L;Nakao M;Thomas MA;Mulder N;Karavidopoulou Y;Jin L;Kim S;Yasuda T;Lenhard B;Eveno E;Suzuki Y;Yamasaki C;Takeda J;Gough C;Hilton P;Fujii Y;Sakai H;Tanaka S;Amid C;Bellgard M;Bonaldo Mde F;Bono H;Bromberg SK;Brookes AJ;Bruford E;Carninci P;Chelala C;Couillault C;de Souza SJ;Debily MA;Devignes MD;Dubchak I;Endo T;Estreicher A;Eyras E;Fukami-Kobayashi K;Gopinath GR;Graudens E;Hahn Y;Han M;Han ZG;Hanada K;Hanaoka H;Harada E;Hashimoto K;Hinz U;Hirai M;Hishiki T;Hopkinson I;Imbeaud S;Inoko H;Kanapin A;Kaneko Y;Kasukawa T;Kelso J;Kersey P;Kikuno R;Kimura K;Korn B;Kuryshev V;Makalowska I;Makino T;Mano S;Mariage-Samson R;Mashima J;Matsuda H;Mewes HW;Minoshima S;Nagai K;Nagasaki H;Nagata N;Nigam R;Ogasawara O;Ohara O;Ohtsubo M;Okada N;Okido T;Oota S;Ota M;Ota T;Otsuki T;Piatier-Tonneau D;Poustka A;Ren SX;Saitou N;Sakai K;Sakamoto S;Sakate R;Schupp I;Servant F;Sherry S;Shiba R;Shimizu N;Shimoyama M;Simpson AJ;Soares B;Steward C;Suwa M;Suzuki M;Takahashi A;Tamiya G;Tanaka H;Taylor T;Terwilliger JD;Unneberg P;Veeramachaneni V;Watanabe S;Wilming L;Yasuda N;Yoo HS;Stodolsky M;Makalowski W;Go M;Nakai K;Takagi T;Kanehisa M;Sakaki Y;Quackenbush J;Okazaki Y;Hayashizaki Y;Hide W;Chakraborty R;Nishikawa K;Sugawara H;Tateno Y;Chen Z;Oishi M;Tonellato P;Apweiler R;Okubo K;Wagner L;Wiemann S;Strausberg RL;Isogai T;Auffray C;Nomura N;Gojobori T;Sugano S
通讯作者：
Sugano S
影响因子：
64.8
作者：
Matsumoto, T;Wu, JZ;Sugiura, M
通讯作者：
Sugiura, M
影响因子：
7.4
作者：
Yuan, QP;Shu, OY;Buell, CR
通讯作者：
Buell, CR
影响因子：
7
作者：
Stein, LD;Mungall, C;Lewis, S
通讯作者：
Lewis, S
影响因子：
3
作者：
Dowell RD;Jokerst RM;Day A;Eddy SR;Stein L
通讯作者：
Stein L