RNAcentral 2021: secondary structure integration, improved sequence search and new member databases.
RNAcentral 2021: secondary structure integration, improved sequence search and new member databases.
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DOI：
10.1093/nar/gkaa921
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发表时间：
2021-01-08
影响因子：
14.9
通讯作者：
RNAcentral Consortium
中科院分区：
文献类型：
--
作者：
RNAcentral Consortium
rnacentral是一个非编码RNA（NCRNA）序列的综合数据库，该序列可提供44个RNA资源的访问点，并且来自多种生物体和RNA类型的> 1800万个NCRNA序列也包括二级（2d）结构信息。对于> 1300万个序列，将Rnacentral成为世界上最大的RNA 2D结构数据库。可视化方法，使用一致的，可重复的和可识别的布局，用于序列相似性搜索已通过RNA类型，有机体，源数据库或任何关键字来更新，以筛选搜索结果。可重复使用的Web组件，已集成到包括RFAM，MIRBASE和SNODB在内的几个Rnacentral数据库中。 RNA类型和亚型的细粒度分配，所有rnacentral序列都用序列本体术语注释。 。
RNAcentral is a comprehensive database of non-coding RNA (ncRNA) sequences that provides a single access point to 44 RNA resources and >18 million ncRNA sequences from a wide range of organisms and RNA types. RNAcentral now also includes secondary (2D) structure information for >13 million sequences, making RNAcentral the world’s largest RNA 2D structure database. The 2D diagrams are displayed using R2DT, a new 2D structure visualization method that uses consistent, reproducible and recognizable layouts for related RNAs. The sequence similarity search has been updated with a faster interface featuring facets for filtering search results by RNA type, organism, source database or any keyword. This sequence search tool is available as a reusable web component, and has been integrated into several RNAcentral member databases, including Rfam, miRBase and snoDB. To allow for a more fine-grained assignment of RNA types and subtypes, all RNAcentral sequences have been annotated with Sequence Ontology terms. The RNAcentral database continues to grow and provide a central data resource for the RNA community. RNAcentral is freely available at https://rnacentral.org.
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影响因子：
14.9
作者：
Chan PP;Lowe TM
通讯作者：
Lowe TM
地狱1.1：RNA同源性搜索速度更快100倍。
DOI：
10.1093/bioinformatics/btt509
发表时间：
2013-11-15
期刊：
Bioinformatics (Oxford, England)
影响因子：
--
作者：
Nawrocki EP;Eddy SR
通讯作者：
Eddy SR
影响因子：
14.9
作者：
Karagkouni D;Paraskevopoulou MD;Chatzopoulos S;Vlachos IS;Tastsoglou S;Kanellos I;Papadimitriou D;Kavakiotis I;Maniou S;Skoufos G;Vergoulis T;Dalamagas T;Hatzigeorgiou AG
通讯作者：
Hatzigeorgiou AG
影响因子：
14.9
作者：
Kalvari I;Argasinska J;Quinones-Olvera N;Nawrocki EP;Rivas E;Eddy SR;Bateman A;Finn RD;Petrov AI
通讯作者：
Petrov AI
影响因子：
14.9
作者：
Fromm, Bastian;Domanska, Diana;Peterson, Kevin J.
通讯作者：
Peterson, Kevin J.