Integrative Genomics Viewer (IGV): high-performance genomics data visualization and exploration.

Integrative Genomics Viewer (IGV): high-performance genomics data visualization and exploration.
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DOI:
10.1093/bib/bbs017
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发表时间:
2013-03
影响因子:
9.5
通讯作者:
Mesirov JP
Mesirov JP
中科院分区:
生物学2区
文献类型:
--
作者:
Thorvaldsdóttir H;Robinson JT;Mesirov JP

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数据可视化是基因组数据分析的一个重要组成部分。然而,由当今的测序和基于阵列的分析方法所产生的数据集的规模和多样性给可视化工具带来了重大挑战。整合基因组学浏览器(IGV)是一种高性能的浏览器,它能高效处理大型异构数据集,同时在基因组分辨率的各个层面提供流畅且直观的用户体验。IGV的一个关键特征是它关注基因组研究的综合性,既支持基于阵列的数据,也支持新一代测序数据,并且整合临床和表型数据。尽管IGV经常被用于查看来自公共资源的基因组数据,但其主要重点是支持那些希望可视化并探索自己的数据集或同事数据集的研究人员。为此,IGV支持灵活加载本地和远程数据集,并经过优化,以便在标准桌面系统上提供高性能的数据可视化和探索。IGV可从http://www.broadinstitute.org/igv根据GNU LGPL开源许可证免费下载。
Data visualization is an essential component of genomic data analysis. However, the size and diversity of the data sets produced by today’s sequencing and array-based profiling methods present major challenges to visualization tools. The Integrative Genomics Viewer (IGV) is a high-performance viewer that efficiently handles large heterogeneous data sets, while providing a smooth and intuitive user experience at all levels of genome resolution. A key characteristic of IGV is its focus on the integrative nature of genomic studies, with support for both array-based and next-generation sequencing data, and the integration of clinical and phenotypic data. Although IGV is often used to view genomic data from public sources, its primary emphasis is to support researchers who wish to visualize and explore their own data sets or those from colleagues. To that end, IGV supports flexible loading of local and remote data sets, and is optimized to provide high-performance data visualization and exploration on standard desktop systems. IGV is freely available for download from http://www.broadinstitute.org/igv, under a GNU LGPL open-source license.
DOI: 10.1038/nature08822
发表时间: 2010-02-18
期刊: Nature
影响因子: 64.8
作者:
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BAMVIEW:在参考序列的上下文中查看映射的读取对齐数据。
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发表时间: 2010-03-01
期刊: BIOINFORMATICS
影响因子: 5.8
作者:
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