Genomes OnLine Database (GOLD) v.6: data updates and feature enhancements.
Genomes OnLine Database (GOLD) v.6: data updates and feature enhancements.
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DOI：
10.1093/nar/gkw992
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发表时间：
2017-01-04
影响因子：
14.9
通讯作者：
Reddy TB
中科院分区：
文献类型：
--
作者：
Mukherjee S;Stamatis D;Bertsch J;Ovchinnikova G;Verezemska O;Isbandi M;Thomas AD;Ali R;Sharma K;Kyrpides NC;Reddy TB
基因组在线数据库（GOLD） （https://gold.jgi.doe.gov）是一个人工管理的数据管理系统，它将测序项目与来自世界各地的相关元数据进行编目。在当前版本的GOLD （v.6）中，所有项目都是基于四级分类系统进行组织的，其形式为研究、有机体（分离物）或生物样本（环境样本）、测序项目和分析项目。目前，GOLD提供26 117项研究，239 100个生物体，15 887个生物样品，97 212个测序项目和78 579个分析项目的信息。它们与超过312个元数据字段集成，其中58个是包含2067个术语的受控词汇表。web界面方便提交各种测序项目（如分离基因组、单细胞基因组、宏基因组、亚转录组）和复杂分析项目（如来自宏基因组的基因组，或来自多个测序项目的组合组装）。GOLD提供与集成微生物基因组（IMG）系统的无缝接口，并支持和促进基因组标准联盟（GSC）最低信息标准。本文描述了过去两年中数据更新和添加的附加功能。
The Genomes Online Database (GOLD) (https://gold.jgi.doe.gov) is a manually curated data management system that catalogs sequencing projects with associated metadata from around the world. In the current version of GOLD (v.6), all projects are organized based on a four level classification system in the form of a Study, Organism (for isolates) or Biosample (for environmental samples), Sequencing Project and Analysis Project. Currently, GOLD provides information for 26 117 Studies, 239 100 Organisms, 15 887 Biosamples, 97 212 Sequencing Projects and 78 579 Analysis Projects. These are integrated with over 312 metadata fields from which 58 are controlled vocabularies with 2067 terms. The web interface facilitates submission of a diverse range of Sequencing Projects (such as isolate genome, single-cell genome, metagenome, metatranscriptome) and complex Analysis Projects (such as genome from metagenome, or combined assembly from multiple Sequencing Projects). GOLD provides a seamless interface with the Integrated Microbial Genomes (IMG) system and supports and promotes the Genomic Standards Consortium (GSC) Minimum Information standards. This paper describes the data updates and additional features added during the last two years.
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影响因子：
14.9
作者：
Grigoriev IV;Nikitin R;Haridas S;Kuo A;Ohm R;Otillar R;Riley R;Salamov A;Zhao X;Korzeniewski F;Smirnova T;Nordberg H;Dubchak I;Shabalov I
通讯作者：
Shabalov I
影响因子：
14.9
作者：
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通讯作者：
Sayers EW
影响因子：
14.9
作者：
Kodama Y;Shumway M;Leinonen R;International Nucleotide Sequence Database Collaboration
通讯作者：
International Nucleotide Sequence Database Collaboration
影响因子：
14.9
作者：
Federhen S
通讯作者：
Federhen S
影响因子：
--
作者：
Field, Dawn;Sterk, Peter;Caporaso, Gregory
通讯作者：
Caporaso, Gregory