Stochastic Simulation Service: Bridging the Gap between the Computational Expert and the Biologist.
Stochastic Simulation Service: Bridging the Gap between the Computational Expert and the Biologist.
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DOI：
10.1371/journal.pcbi.1005220
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发表时间：
2016-12
影响因子：
4.3
通讯作者：
Petzold LR
中科院分区：
文献类型：
--
作者：
Drawert B;Hellander A;Bales B;Banerjee D;Bellesia G;Daigle BJ Jr;Douglas G;Gu M;Gupta A;Hellander S;Horuk C;Nath D;Takkar A;Wu S;Lötstedt P;Krintz C;Petzold LR
我们推出 StochSS：随机模拟即服务，这是一个集成开发环境，用于在最多三个维度上对确定性和离散随机生化系统进行建模和模拟。易于使用的图形用户界面使研究人员能够在台式机或笔记本电脑上快速开发和模拟生物模型，然后可以对其进行扩展以包含不断增加的复杂性。 StochSS 具有最先进的模拟引擎。随着对计算能力的需求增加，StochSS可以无缝扩展云中的计算资源。此外，StochSS 可以部署为多用户软件环境，协作者可以通过公共模型存储库共享计算资源并交换模型。我们通过复杂程度不断增加的模型开发和模拟示例来展示 StochSS 的功能和易用性。
We present StochSS: Stochastic Simulation as a Service, an integrated development environment for modeling and simulation of both deterministic and discrete stochastic biochemical systems in up to three dimensions. An easy to use graphical user interface enables researchers to quickly develop and simulate a biological model on a desktop or laptop, which can then be expanded to incorporate increasing levels of complexity. StochSS features state-of-the-art simulation engines. As the demand for computational power increases, StochSS can seamlessly scale computing resources in the cloud. In addition, StochSS can be deployed as a multi-user software environment where collaborators share computational resources and exchange models via a public model repository. We demonstrate the capabilities and ease of use of StochSS with an example of model development and simulation at increasing levels of complexity.
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影响因子：
4.4
作者：
Cao, Yang;Gillespie, Daniel T.;Petzold, Linda R.
通讯作者：
Petzold, Linda R.
影响因子：
--
作者：
Hepburn, Iain;Chen, Weiliang;De Schutter, Erik
通讯作者：
De Schutter, Erik
影响因子：
5.8
作者：
Hucka, M;Finney, A;Wang, J
通讯作者：
Wang, J
影响因子：
8.6
作者：
Howard, M;Rutenberg, AD
通讯作者：
Rutenberg, AD
DOI：
10.1109/tvcg.2011.185
发表时间：
2011-12-01
影响因子：
5.2
作者：
Bostock, Michael;Ogievetsky, Vadim;Heer, Jeffrey
通讯作者：
Heer, Jeffrey