A biomedical open knowledge network harnesses the power of AI to understand deep human biology.

A biomedical open knowledge network harnesses the power of AI to understand deep human biology.
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DOI:
10.1002/aaai.12037
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发表时间:
2022
期刊:
影响因子:
0.9
通讯作者:
Huang, Sui
Huang, Sui
中科院分区:
计算机科学4区
文献类型:
--
作者:
Baranzini, Sergio E.;Borner, Katy;Morris, John;Nelson, Charlotte A.;Soman, Karthik;Schleimer, Erica;Keiser, Michael;Musen, Mark;Pearce, Roger;Reza, Tahsin;Smith, Brett;Herr, Bruce W., II;Oskotsky, Boris;Rizk-Jackson, Angela;Rankin, Katherine P.;Sanders, Stephan J.;Bove, Riley;Rose, Peter W.;Israni, Sharat;Huang, Sui

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知识表示和推理(KR&R)已经成功地应用于许多领域,使计算机能够用人工智能方法解决复杂问题。然而,它在生物医学上的应用一直滞后,部分原因是控制人类生理学和病理学的分子和细胞途径的复杂性令人生畏。在本文中,我们描述了SPOKE的具体用途,SPOKE是一个开放的知识网络,它将来自37个专业和人工管理的数据库的管理信息连接到一个属性图中,迄今为止有300万个节点和1500万条边。本文讨论的应用包括药物发现、COVID-19研究以及慢性病诊断和管理。
Knowledge representation and reasoning (KR&R) has been successfully implemented in many fields to enable computers to solve complex problems with AI methods. However, its application to biomedicine has been lagging in part due to the daunting complexity of molecular and cellular pathways that govern human physiology and pathology. In this article we describe concrete uses of SPOKE, an open knowledge network that connects curated information from 37 specialized and human-curated databases into a single property graph, with 3 million nodes and 15 million edges to date. Applications discussed in this article include drug discovery, COVID-19 research and chronic disease diagnosis and management.
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