BioHackathon series in 2011 and 2012: penetration of ontology and linked data in life science domains.
BioHackathon series in 2011 and 2012: penetration of ontology and linked data in life science domains.
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DOI：
10.1186/2041-1480-5-5
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发表时间：
2014-02-05
影响因子：
1.9
通讯作者：
Takagi T
中科院分区：
文献类型：
--
作者：
Katayama T;Wilkinson MD;Aoki-Kinoshita KF;Kawashima S;Yamamoto Y;Yamaguchi A;Okamoto S;Kawano S;Kim JD;Wang Y;Wu H;Kano Y;Ono H;Bono H;Kocbek S;Aerts J;Akune Y;Antezana E;Arakawa K;Aranda B;Baran J;Bolleman J;Bonnal RJ;Buttigieg PL;Campbell MP;Chen YA;Chiba H;Cock PJ;Cohen KB;Constantin A;Duck G;Dumontier M;Fujisawa T;Fujiwara T;Goto N;Hoehndorf R;Igarashi Y;Itaya H;Ito M;Iwasaki W;Kalaš M;Katoda T;Kim T;Kokubu A;Komiyama Y;Kotera M;Laibe C;Lapp H;Lütteke T;Marshall MS;Mori T;Mori H;Morita M;Murakami K;Nakao M;Narimatsu H;Nishide H;Nishimura Y;Nystrom-Persson J;Ogishima S;Okamura Y;Okuda S;Oshita K;Packer NH;Prins P;Ranzinger R;Rocca-Serra P;Sansone S;Sawaki H;Shin SH;Splendiani A;Strozzi F;Tadaka S;Toukach P;Uchiyama I;Umezaki M;Vos R;Whetzel PL;Yamada I;Yamasaki C;Yamashita R;York WS;Zmasek CM;Kawamoto S;Takagi T
语义技术在生物数据整合以及生物信息学分析和可视化工具互操作性方面的应用是过去五年来在日本举办的一系列年度BioHackathon的共同主题。在此，我们对2011年在京都和2012年在富山举办的BioHackathons的活动和成果进行了回顾。为了在生命科学中有效地实施语义技术，与会者组成了各种分组，并就以下专题开展了工作：特定领域的资源描述框架模型、文献的文本挖掘、本体论开发、生物数据库的基本元数据、能够有效开发语义网技术和实现互操作性的平台，以及开发语义网数据的应用程序。在这篇评论中，我们简要介绍了这些小组所涵盖的主题。提出的意见，得出的结论，并从这些活动中出现的软件开发项目进行了讨论。
The application of semantic technologies to the integration of biological data and the interoperability of bioinformatics analysis and visualization tools has been the common theme of a series of annual BioHackathons hosted in Japan for the past five years. Here we provide a review of the activities and outcomes from the BioHackathons held in 2011 in Kyoto and 2012 in Toyama. In order to efficiently implement semantic technologies in the life sciences, participants formed various sub-groups and worked on the following topics: Resource Description Framework (RDF) models for specific domains, text mining of the literature, ontology development, essential metadata for biological databases, platforms to enable efficient Semantic Web technology development and interoperability, and the development of applications for Semantic Web data. In this review, we briefly introduce the themes covered by these sub-groups. The observations made, conclusions drawn, and software development projects that emerged from these activities are discussed.
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影响因子：
14.9
作者：
Kanehisa M;Goto S;Sato Y;Furumichi M;Tanabe M
通讯作者：
Tanabe M
影响因子：
5.8
作者：
Arakawa, K;Mori, K;Tomita, M
通讯作者：
Tomita, M
影响因子：
14.9
作者：
Fernández-Suárez XM;Galperin MY
通讯作者：
Galperin MY
影响因子：
5.8
作者：
Kalas, Matus;Puntervoll, Pal;Jonassen, Inge
通讯作者：
Jonassen, Inge
影响因子：
14.9
作者：
Juty N;Le Novère N;Laibe C
通讯作者：
Laibe C