Identifiers.org and MIRIAM Registry: community resources to provide persistent identification.

Identifiers.org and MIRIAM Registry: community resources to provide persistent identification.
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DOI:
10.1093/nar/gkr1097
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发表时间:
2012-01
影响因子:
14.9
通讯作者:
Laibe C
Laibe C
中科院分区:
生物学2区
文献类型:
--
作者:
Juty N;Le Novère N;Laibe C

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模型注册表注释(http://www.ebi.ac.uk/miriam)所需的最小信息为生物医学领域中使用的数据提供了独特的,多年生和与位置无关的标识符。其核心是数据收集的共享目录,为此创建了一个单个名称空间,并记录了广泛的元数据。该名称空间允许生成统一的资源标识符(URI)唯一标识集合中的任何记录。此外,提供各种服务以促进标识符的创建和解决。自2005年推出以来,该系统已随着提供的标识符结构,软件基础架构,记录的数据收集数量以及注册表本身的范围而发展。我们在这里描述了新的并行标识方案和更新的支持软件基础架构。我们还介绍了新的Identifiers.org Service(http://identifiers.org),该服务构建在注册表中存储的信息上,并以统一资源定位器(urls)的形式提供直接可分解的标识符。识别方案和解决系统的灵活性允许其在许多不同的领域中使用,在许多不同的领域中,需要对数据实体进行明确的和多年生的识别。
The Minimum Information Required in the Annotation of Models Registry (http://www.ebi.ac.uk/miriam) provides unique, perennial and location-independent identifiers for data used in the biomedical domain. At its core is a shared catalogue of data collections, for each of which an individual namespace is created, and extensive metadata recorded. This namespace allows the generation of Uniform Resource Identifiers (URIs) to uniquely identify any record in a collection. Moreover, various services are provided to facilitate the creation and resolution of the identifiers. Since its launch in 2005, the system has evolved in terms of the structure of the identifiers provided, the software infrastructure, the number of data collections recorded, as well as the scope of the Registry itself. We describe here the new parallel identification scheme and the updated supporting software infrastructure. We also introduce the new Identifiers.org service (http://identifiers.org) that is built upon the information stored in the Registry and which provides directly resolvable identifiers, in the form of Uniform Resource Locators (URLs). The flexibility of the identification scheme and resolving system allows its use in many different fields, where unambiguous and perennial identification of data entities are necessary.
DOI: 10.1038/nbt1156
发表时间: 2005-12-01
影响因子: 46.9
作者:
Le Novère, N;Finney, A;Wanner, BL
通讯作者: Wanner, BL
Miriam Resources:生成和解决系统生物学中强大的交叉引用的工具。
DOI: 10.1186/1752-0509-1-58
发表时间: 2007-12-13
影响因子: --
作者:
Laibe, Camille;Le Novere, Nicolas
通讯作者: Le Novere, Nicolas
DOI: 10.1038/nbt1346
发表时间: 2007-11-01
影响因子: 46.9
作者:
Smith, Barry;Ashburner, Michael;Lewis, Suzanna
通讯作者: Lewis, Suzanna
DOI: 10.1093/bioinformatics/btg015
发表时间: 2003-03-01
期刊: BIOINFORMATICS
影响因子: 5.8
作者:
Hucka, M;Finney, A;Wang, J
通讯作者: Wang, J
DOI: 10.1038/nbt.1411
发表时间: 2008-08
影响因子: 46.9
作者:
Taylor, Chris F.;Field, Dawn;Sansone, Susanna-Assunta;Aerts, Jan;Apweiler, Rolf;Ashburner, Michael;Ball, Catherine A.;Binz, Pierre-Alain;Bogue, Molly;Booth, Tim;Brazma, Alvis;Brinkman, Ryan R.;Clark, Adam Michael;Deutsch, Eric W.;Fiehn, Oliver;Fostel, Jennifer;Ghazal, Peter;Gibson, Frank;Gray, Tanya;Grimes, Graeme;Hancock, John M.;Hardy, Nigel W.;Hermjakob, Henning;Julian, Randall K., Jr.;Kane, Matthew;Kettner, Carsten;Kinsinger, Christopher;Kolker, Eugene;Kuiper, Martin;Le Novere, Nicolas;Leebens-Mack, Jim;Lewis, Suzanna E.;Lord, Phillip;Mallon, Ann-Marie;Marthandan, Nishanth;Masuya, Hiroshi;McNally, Ruth;Mehrle, Alexander;Morrison, Norman;Orchard, Sandra;Quackenbush, John;Reecy, James M.;Robertson, Donald G.;Rocca-Serra, Philippe;Rodriguez, Henry;Rosenfelder, Heiko;Santoyo-Lopez, Javier;Scheuermann, Richard H.;Schober, Daniel;Smith, Barry;Snape, Jason;Stoeckert, Christian J., Jr.;Tipton, Keith;Sterk, Peter;Untergasser, Andreas;Vandesompele, Jo;Wiemann, Stefan
通讯作者: Wiemann, Stefan