The Yak genome database: an integrative database for studying yak biology and high-altitude adaption.
The Yak genome database: an integrative database for studying yak biology and high-altitude adaption.
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牦牛基因组数据库：研究牦牛生物学和高原适应的综合数据库
DOI：
10.1186/1471-2164-13-600
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发表时间：
2012-11-07
期刊：
影响因子：
4.4
通讯作者：
Qiu Q
中科院分区：
文献类型：
--
作者：
Hu Q;Ma T;Wang K;Xu T;Liu J;Qiu Q
牦牛（Bos grunniens）是一种长毛牛，生活在高海拔地区，是牛奶，肉类，纤维和燃料的重要来源。最近对其基因组的测序、组装和注释有望进一步加深我们对它适应高海拔生活的方式及其生态重要特征的理解。牦牛基因组数据库（YGD）是一个基于互联网的资源，它提供了关于牦牛基因和蛋白质的基因组序列数据和预测功能信息。存储在YGD中的策展数据包括基因组序列、预测基因和相关注释、非编码RNA序列、转座因子、单核苷酸变异以及人类、牛和牦牛之间的三向全基因组比对。YGD提供了有用的搜索和数据挖掘工具，包括通过名称或使用功能关键字搜索基因的能力，以及GBrowse基因组浏览器和/或BLAST服务器，可用于可视化基因组区域并识别相似序列。也可以下载YGD的序列数据进行本地搜索。建立了牦牛基因组数据库（YGD），为牦牛高原适应性研究和牛基因组学研究提供了基础数据。该数据库将不断更新，以纳入新的信息，如转录组数据和群体重测序数据。YGD可在http://me.lzu.edu.cn/yak上访问。
The yak (Bos grunniens) is a long-haired bovine that lives at high altitudes and is an important source of milk, meat, fiber and fuel. The recent sequencing, assembly and annotation of its genome are expected to further our understanding of the means by which it has adapted to life at high altitudes and its ecologically important traits. The Yak Genome Database (YGD) is an internet-based resource that provides access to genomic sequence data and predicted functional information concerning the genes and proteins of Bos grunniens. The curated data stored in the YGD includes genome sequences, predicted genes and associated annotations, non-coding RNA sequences, transposable elements, single nucleotide variants, and three-way whole-genome alignments between human, cattle and yak. YGD offers useful searching and data mining tools, including the ability to search for genes by name or using function keywords as well as GBrowse genome browsers and/or BLAST servers, which can be used to visualize genome regions and identify similar sequences. Sequence data from the YGD can also be downloaded to perform local searches. A new yak genome database (YGD) has been developed to facilitate studies on high-altitude adaption and bovine genomics. The database will be continuously updated to incorporate new information such as transcriptome data and population resequencing data. The YGD can be accessed at http://me.lzu.edu.cn/yak.
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影响因子：
5.9
作者：
HECHT, HH;BROWN, AM;KUIDA, H
通讯作者：
KUIDA, H
影响因子：
7
作者：
Stein, LD;Mungall, C;Lewis, S
通讯作者：
Lewis, S
牦牛基因组和对高海拔生活的适应
影响因子：
30.8
作者：
Qiu, Qiang;Zhang, Guojie;Liu, Jianquan
通讯作者：
Liu, Jianquan
影响因子：
10.8
作者：
WEIR, EK;TUCKER, A;GROVER, RF
通讯作者：
GROVER, RF
DOI：
10.1126/science.1169588
发表时间：
2009-04-24
期刊：
Science (New York, N.Y.)
影响因子：
--
作者：
Bovine Genome Sequencing and Analysis Consortium;Elsik CG;Tellam RL;Worley KC;Gibbs RA;Muzny DM;Weinstock GM;Adelson DL;Eichler EE;Elnitski L;Guigó R;Hamernik DL;Kappes SM;Lewin HA;Lynn DJ;Nicholas FW;Reymond A;Rijnkels M;Skow LC;Zdobnov EM;Schook L;Womack J;Alioto T;Antonarakis SE;Astashyn A;Chapple CE;Chen HC;Chrast J;Câmara F;Ermolaeva O;Henrichsen CN;Hlavina W;Kapustin Y;Kiryutin B;Kitts P;Kokocinski F;Landrum M;Maglott D;Pruitt K;Sapojnikov V;Searle SM;Solovyev V;Souvorov A;Ucla C;Wyss C;Anzola JM;Gerlach D;Elhaik E;Graur D;Reese JT;Edgar RC;McEwan JC;Payne GM;Raison JM;Junier T;Kriventseva EV;Eyras E;Plass M;Donthu R;Larkin DM;Reecy J;Yang MQ;Chen L;Cheng Z;Chitko-McKown CG;Liu GE;Matukumalli LK;Song J;Zhu B;Bradley DG;Brinkman FS;Lau LP;Whiteside MD;Walker A;Wheeler TT;Casey T;German JB;Lemay DG;Maqbool NJ;Molenaar AJ;Seo S;Stothard P;Baldwin CL;Baxter R;Brinkmeyer-Langford CL;Brown WC;Childers CP;Connelley T;Ellis SA;Fritz K;Glass EJ;Herzig CT;Iivanainen A;Lahmers KK;Bennett AK;Dickens CM;Gilbert JG;Hagen DE;Salih H;Aerts J;Caetano AR;Dalrymple B;Garcia JF;Gill CA;Hiendleder SG;Memili E;Spurlock D;Williams JL;Alexander L;Brownstein MJ;Guan L;Holt RA;Jones SJ;Marra MA;Moore R;Moore SS;Roberts A;Taniguchi M;Waterman RC;Chacko J;Chandrabose MM;Cree A;Dao MD;Dinh HH;Gabisi RA;Hines S;Hume J;Jhangiani SN;Joshi V;Kovar CL;Lewis LR;Liu YS;Lopez J;Morgan MB;Nguyen NB;Okwuonu GO;Ruiz SJ;Santibanez J;Wright RA;Buhay C;Ding Y;Dugan-Rocha S;Herdandez J;Holder M;Sabo A;Egan A;Goodell J;Wilczek-Boney K;Fowler GR;Hitchens ME;Lozado RJ;Moen C;Steffen D;Warren JT;Zhang J;Chiu R;Schein JE;Durbin KJ;Havlak P;Jiang H;Liu Y;Qin X;Ren Y;Shen Y;Song H;Bell SN;Davis C;Johnson AJ;Lee S;Nazareth LV;Patel BM;Pu LL;Vattathil S;Williams RL Jr;Curry S;Hamilton C;Sodergren E;Wheeler DA;Barris W;Bennett GL;Eggen A;Green RD;Harhay GP;Hobbs M;Jann O;Keele JW;Kent MP;Lien S;McKay SD;McWilliam S;Ratnakumar A;Schnabel RD;Smith T;Snelling WM;Sonstegard TS;Stone RT;Sugimoto Y;Takasuga A;Taylor JF;Van Tassell CP;Macneil MD;Abatepaulo AR;Abbey CA;Ahola V;Almeida IG;Amadio AF;Anatriello E;Bahadue SM;Biase FH;Boldt CR;Carroll JA;Carvalho WA;Cervelatti EP;Chacko E;Chapin JE;Cheng Y;Choi J;Colley AJ;de Campos TA;De Donato M;Santos IK;de Oliveira CJ;Deobald H;Devinoy E;Donohue KE;Dovc P;Eberlein A;Fitzsimmons CJ;Franzin AM;Garcia GR;Genini S;Gladney CJ;Grant JR;Greaser ML;Green JA;Hadsell DL;Hakimov HA;Halgren R;Harrow JL;Hart EA;Hastings N;Hernandez M;Hu ZL;Ingham A;Iso-Touru T;Jamis C;Jensen K;Kapetis D;Kerr T;Khalil SS;Khatib H;Kolbehdari D;Kumar CG;Kumar D;Leach R;Lee JC;Li C;Logan KM;Malinverni R;Marques E;Martin WF;Martins NF;Maruyama SR;Mazza R;McLean KL;Medrano JF;Moreno BT;Moré DD;Muntean CT;Nandakumar HP;Nogueira MF;Olsaker I;Pant SD;Panzitta F;Pastor RC;Poli MA;Poslusny N;Rachagani S;Ranganathan S;Razpet A;Riggs PK;Rincon G;Rodriguez-Osorio N;Rodriguez-Zas SL;Romero NE;Rosenwald A;Sando L;Schmutz SM;Shen L;Sherman L;Southey BR;Lutzow YS;Sweedler JV;Tammen I;Telugu BP;Urbanski JM;Utsunomiya YT;Verschoor CP;Waardenberg AJ;Wang Z;Ward R;Weikard R;Welsh TH Jr;White SN;Wilming LG;Wunderlich KR;Yang J;Zhao FQ
通讯作者：
Zhao FQ