Presenting and exploring biological pathways with PathVisio.
Presenting and exploring biological pathways with PathVisio.
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DOI：
10.1186/1471-2105-9-399
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发表时间：
2008-09-25
影响因子：
3
通讯作者：
Evelo C
中科院分区：
文献类型：
--
作者：
van Iersel MP;Kelder T;Pico AR;Hanspers K;Coort S;Conklin BR;Evelo C
生物学途径是生物学概念的有用抽象，处理途径图的软件工具可以帮助生物学研究。Pathplane是一个新的生物途径可视化工具，它模仿了流行的GenMAPP工具，采用了全新的Java实现，可以更好地与其他开源项目集成。GenMAPP MAPP文件格式被GPML取代，GPML是一种新的XML文件格式，可在多个程序之间无缝交换图形路径信息。Pathfamily可以与其他生物信息学工具相结合，开辟三种可能的用途：生物知识的可视化编译，高通量表达数据集的解释，以及具有相互作用信息的途径的计算增强。PathVisio是一款开源软件，可在。Pathplane是生物学途径的图形编辑器，其主要目标是灵活性和易用性。
Biological pathways are a useful abstraction of biological concepts, and software tools to deal with pathway diagrams can help biological research. PathVisio is a new visualization tool for biological pathways that mimics the popular GenMAPP tool with a completely new Java implementation that allows better integration with other open source projects. The GenMAPP MAPP file format is replaced by GPML, a new XML file format that provides seamless exchange of graphical pathway information among multiple programs. PathVisio can be combined with other bioinformatics tools to open up three possible uses: visual compilation of biological knowledge, interpretation of high-throughput expression datasets, and computational augmentation of pathways with interaction information. PathVisio is open source software and available at . PathVisio is a graphical editor for biological pathways, with flexibility and ease of use as primary goals.
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HMDB：人类代谢组数据库。
影响因子：
14.9
作者：
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影响因子：
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通讯作者：
Oda, K
影响因子：
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作者：
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通讯作者：
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影响因子：
19
作者：
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通讯作者：
Maenhaut, C
影响因子：
14.9
作者：
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通讯作者：
Searle S