Phylogenetic and Molecular Evolutionary Investigations of Chloroplast DNA Variation in the Campanulaceae sensu stricto

严格意义上的桔梗叶绿体 DNA 变异的系统发育和分子进化研究

• 批准号: 9982091
• 负责人: Robert Jansen
• 金额: $ 20.01万
• 依托单位: University of Texas at Austin
• 依托单位国家: 美国
• 项目类别: Standard Grant
• 财政年份: 2000
• 资助国家: 美国
• 起止时间: 2000-02-01 至 2003-01-31
• 项目状态: 已结题
• 来源: https://www.nsf.gov/awardsearch/showAward?AWD_ID=9982091&HistoricalAwards=false
• 关键词: Phylogenetic; Molecular; Evolutionary; Investigations; Chloroplast

9982091Jansen Genomic (DNA) data are helping to revolutionize the study of taxonomic relationships, classification, and evolutionary affiliations of organisms. In addition to DNA sequence data (strings of nucleotides from comparable, or homologous, genes), restriction-site data and other kinds of gene-order data are also valuable and powerful sources of evidence. Dr. Jansen at the University of Texas has been a leader in the development of restriction-site and gene-order methods in the analysis of phylogenetic relationships of plants. In this project he and a team of colleagues will study the plant family Campanulaceae (the bellflower family), where the chloroplast genome has the greatest known range of structural or gene-order variants of any flowering plant family, including cases of inversion, expansion/contraction of the IR region (the Inverted Repeat characteristic of all land plant chloroplast genomes), gene transpositions, gene losses, and deletions within large open reading frames. Most of these changes are expected to be rare if not unique events, at the molecular level, and are thus potentially strong markers of sublineages within the family. In many cases, however, the proposed rearrangements must be confirmed by direct nucleotide sequencing of end points or other "hot spots" to ensure comparison of equivalent changes. The project thus combines analyses in the field of molecular evolution with efforts to construct a framework phylogeny for the 30-50 genera of Campanulaceae and an improved classification of these. Dr. Jansen is working with a network of colleagues and collectors around the world to secure samples of all of the known genera of the family, and extended samples within the large genera such as Campanula and Wahlenbergia. Abundant preliminary data have been gathered, in conjunction with former students and other colleagues. DNA sequence data from both chloroplast and nuclear genes are being gathered to generate a phylogeny independent of the rearrangement evidence, and to integrate with morphological characters from traditional taxonomic studies. A recently trained specialist on the group, Dr. William Eddie from Scotland, will likely join the laboratory in Texas, bringing both data from molecular systematic analyses of the chloroplast matK gene and morphological expertise as well. Success in determining the sequence of structural events in repatterning the chloroplast genome of Campanulaceae will help improve generic classification, provide insight to historical biogeography of the family including origins of the numerous island endemics, and help in understanding the evolution of floral form and pollination.

9982091Jansen基因组（DNA）数据正在帮助彻底改变生物的分类关系、分类和进化关系的研究。除了DNA序列数据（来自可比或同源基因的核苷酸串）之外，限制性位点数据和其他类型的基因顺序数据也是有价值和有力的证据来源。德克萨斯大学的Jansen博士在植物系统发育关系分析中一直是限制性位点和基因顺序方法发展的领导者。在这个项目中，他和他的同事们将研究铃兰科植物家族（风铃花家族），其中叶绿体基因组具有所有开花植物家族中已知的最大范围的结构或基因顺序变异，包括倒置，IR区域的扩展/收缩（所有陆地植物叶绿体基因组的反向重复特征），基因转位，基因丢失和大型开放阅读框中的缺失。在分子水平上，大多数这些变化即使不是独特的事件，也很罕见，因此可能是家族内亚谱系的强大标记。然而，在许多情况下，提出的重排必须通过末端或其他“热点”的直接核苷酸测序来确认，以确保等效变化的比较。因此，该项目结合了分子进化领域的分析，努力为30-50属的樟科植物构建一个框架系统发育，并改进了这些属的分类。Jansen博士正在与世界各地的同事和收藏家合作，以确保该家族所有已知属的样本，并在Campanula和Wahlenbergia等大属中扩展样本。与以前的学生和其他同事一起收集了大量的初步数据。来自叶绿体和核基因的DNA序列数据正在被收集，以产生一个独立于重排证据的系统发育，并与传统分类研究的形态特征相结合。来自苏格兰的威廉·埃迪（William Eddie）博士是该小组最近接受培训的专家，他可能会加入德克萨斯州的实验室，带来叶绿体matK基因的分子系统分析数据和形态学专业知识。成功确定康柏科植物叶绿体基因组重组过程中的结构事件序列，将有助于完善属类分类，为了解康柏科植物的历史生物地理学，包括许多岛屿特有植物的起源，以及了解花的形态和授粉的进化提供帮助。