Microarray Resources for Maize Research

玉米研究的微阵列资源

• 批准号: 0321663
• 负责人: Vicki Chandler
• 金额: --
• 依托单位: University of Arizona
• 依托单位国家: 美国
• 项目类别: Cooperative Agreement
• 财政年份: 2003
• 资助国家: 美国
• 起止时间: 2003-10-01 至 2007-09-30
• 项目状态: 已结题
• 来源: https://www.nsf.gov/awardsearch/showAward?AWD_ID=0321663&HistoricalAwards=false
• 关键词: Microarray; Resources; Maize; Research

Maize is the most economically important crop in the US and the premier organism for addressing fundamental biological questions in monocots, especially the cereals, which contribute 70% of humanity's diet. The robust scientific community combined with the extensive genetic and genomic tools available and accumulating, make maize an excellent experimental system. This project will provide a low cost, comprehensive, public sector microarray resource for expression analysis in the important crop plant maize (Zea mays L.). Objectives are: 1) Continue producing maize cDNA amplicon arrays as needed by users.2) Produce an array with 70-mer oligonucleotides representing the 30,000 identifiable unique maize genes, which should allow better discrimination among gene duplicates (common in maize) relative to cDNA arrays. Provide community with arrays and a hybridization service using a minimal cost recovery model. 3) Provide a website to disseminate project information and provide all expression data generated by this project within a project-specific relational database Zeamage, for Zea mays Gene Expression Database, with links to rice and maize genome annotation. 4) Perform expression profiling with a subset of maize tissues to provide a baseline of data and detailed protocols for the community. 5) Utilize flexible Nimblegen system to experimentally refine oligonucleotide design for the next generation of 70-mer arrays to achieve better discrimination among gene family members and gene duplications. The availability of low cost arrays and hybridization services provided by this project will enable a much larger number of investigators to apply global gene expression profiling to their specific applied or fundamental research programs on maize. Importantly, as ALL the data will be quickly available within a public database, investigators at institutions that do not have the resources to perform the experiments themselves will have access to the data. In addition to training postdoctoral associates and undergraduate students, several outreach components to train a broad community of researchers to the latest in expression profiling technology will be carried out. These activities include holding biannual three-day hands-on microarray workshops, holding half-day workshops at annual meetings, hosting visiting scientists at our facilities, and developing a interactive website and other mechanisms for communication with end-users. DeliverablesAccessible from http://www.tigr.org:1) Maize cDNA amplicon arrays. 2) Oligonucleotide arrays for at least 30,000 unique maize genes.3) A hybridization service.4) Zeamage database containing expression profiles for a subset of maize tissues, detailed protocols, with links to rice and maize genome annotation.

玉米是美国最重要的经济作物，也是解决单子叶植物基本生物学问题的首要生物，特别是占人类饮食70%的谷物。强大的科学界与广泛的遗传和基因组工具相结合，使玉米成为一个优秀的实验系统。该项目将为重要作物玉米(Zea Mays L.)的表达分析提供一个低成本、全面的公共部门微阵列资源。目标是：1)根据用户的需要继续生产玉米cDNA扩增子阵列。2)生产一个包含代表30,000个可识别的独特玉米基因的70聚体寡核苷酸的阵列，这应该能够更好地区分基因重复(在玉米中常见)相对于cDNA阵列。使用最低成本回收模式为社区提供阵列和杂交服务。3)提供一个网站，以传播项目信息，并在特定于项目的关系数据库Zeamage中提供该项目产生的所有表达数据，用于玉米基因表达数据库，并带有与水稻和玉米基因组注释的链接。4)利用玉米组织的子集进行表达谱分析，为社区提供数据基线和详细的协议。5)利用灵活的NimbleGen系统对下一代70聚体阵列的寡核苷酸设计进行实验性改进，以实现对基因家族成员和基因复制的更好区分。该项目提供的低成本阵列和杂交服务将使更多的研究人员能够将全球基因表达谱应用于他们特定的玉米应用或基础研究项目。重要的是，由于所有数据都将在公共数据库中快速获得，那些本身没有资源进行实验的机构的研究人员将可以访问这些数据。除了对博士后助理和本科生进行培训外，还将开展若干外联活动，培训广大研究人员掌握最新的表情特征分析技术。这些活动包括每年举办两次为期三天的实践微阵列讲习班，在年会上举行半天讲习班，在我们的设施接待来访的科学家，并开发一个互动网站和其他与最终用户沟通的机制。可从http://www.tigr.org:1)玉米cdna扩增子阵列获得。2)至少30,000个独特玉米基因的寡核苷酸阵列。3)杂交服务。4)Zeamage数据库，包含玉米组织子集的表达谱，详细的协议，与水稻和玉米基因组注释的链接。