CAREER: Simulating Self-Assembly at Cellular Scales
职业:模拟细胞尺度的自组装
基本信息
- 批准号:0346981
- 负责人:
- 金额:$ 83.81万
- 依托单位:
- 依托单位国家:美国
- 项目类别:Continuing Grant
- 财政年份:2004
- 资助国家:美国
- 起止时间:2004-07-01 至 2009-06-30
- 项目状态:已结题
- 来源:
- 关键词:
项目摘要
ABSTRACTDBI-BDI: 0346981 PI: SchwartzCAREER AwardCarnegie Mellon University has been awarded a grant to develop computational methods for biological modeling and simulation in small to medium size cellular systems. The project will develop methods for simulating self-assembly systems on small to medium scales. Self-assembly systems, collections of molecular subunits that spontaneously assemble into larger structures under appropriate conditions, are crucial to many cellular processes. Accurate models of their behavior on small scales are therefore essential to modeling cell function and reliably predicting cellular responses to various interventions. The project will accomplish this research goal primarily by developing algorithms and theory for small-system discrete-event models to complement prevailing large-system differential equation models. As an integral part of the project methodologies for teaching computional biology will be developed and used in the curriculum at CMU and in teaching computional biology to general biologists. The project is aimed at advancing the field of computional biology through the full integration of innovative and advanced research with the education of a diverse array of students.
摘要DBI-BDI:0346981 PI:SchwartzCAREER AwardCarnegie Mellon University获得了一项资助,用于开发中小型细胞系统的生物建模和模拟计算方法。该项目将开发模拟中小规模自组装系统的方法。自组装系统,即分子亚基在适当条件下自发组装成更大结构的集合,对许多细胞过程至关重要。因此,它们在小尺度上行为的准确模型对于建模细胞功能和可靠地预测细胞对各种干预的反应至关重要。该项目将主要通过开发小系统离散事件模型的算法和理论来实现这一研究目标,以补充流行的大系统微分方程模型。作为该项目的一个组成部分,计算生物学教学方法将被开发和用于CMU的课程和普通生物学家的计算生物学教学。该项目旨在通过将创新和先进研究与多元化学生的教育充分整合,推进计算生物学领域。
项目成果
期刊论文数量(0)
专著数量(0)
科研奖励数量(0)
会议论文数量(0)
专利数量(0)
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Russell Schwartz其他文献
Learning Physical Parameters of Capsid Assembly Systems from Indirect Measures of Assembly Progress
- DOI:
10.1016/j.bpj.2010.12.2391 - 发表时间:
2011-02-02 - 期刊:
- 影响因子:
- 作者:
M. Senthil Kumar;Gregory Smith;Lu Xie;Rupinder P. Khandpur;Russell Schwartz - 通讯作者:
Russell Schwartz
Erratum to: ‘Reference-free inference of tumor phylogenies from single-cell sequencing data’
- DOI:
10.1186/s12864-016-2609-2 - 发表时间:
2016-05-10 - 期刊:
- 影响因子:3.700
- 作者:
Ayshwarya Subramanian;Russell Schwartz - 通讯作者:
Russell Schwartz
Toward a Unified Model of Molecular Crowding: A Regression Approach to Predict Equilibria and Kinetics of Assembly Systems in Crowded Environments
- DOI:
10.1016/j.bpj.2010.12.3532 - 发表时间:
2011-02-02 - 期刊:
- 影响因子:
- 作者:
Byoungkoo Lee;Philip R. LeDuc;Russell Schwartz - 通讯作者:
Russell Schwartz
Computational models of molecular self-organization in cellular environments
- DOI:
10.1007/s12013-007-0012-y - 发表时间:
2007-06-20 - 期刊:
- 影响因子:2.500
- 作者:
Philip LeDuc;Russell Schwartz - 通讯作者:
Russell Schwartz
Parameter Effects Of Crowding On Binding Chemistry Using Stochastic Off-lattice Simulations
- DOI:
10.1016/j.bpj.2008.12.344 - 发表时间:
2009-02-01 - 期刊:
- 影响因子:
- 作者:
Byoungkoo Lee;Philip R. LeDuc;Russell Schwartz - 通讯作者:
Russell Schwartz
Russell Schwartz的其他文献
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{{ truncateString('Russell Schwartz', 18)}}的其他基金
NSF Student Travel Grant for 2020 Annual International Conference on Research in Computational Molecular Biology (RECOMB 2020)
NSF 学生旅费资助 2020 年计算分子生物学研究国际会议 (RECOMB 2020)
- 批准号:
2004403 - 财政年份:2020
- 资助金额:
$ 83.81万 - 项目类别:
Standard Grant
The 18th International Conference on Research in Computational Molecular Biology (RECOMB 2014)
第18届国际计算分子生物学研究会议(RECOMB 2014)
- 批准号:
1353787 - 财政年份:2013
- 资助金额:
$ 83.81万 - 项目类别:
Standard Grant
Generalizing Haplotype Models for Phylogenetics
系统发育学单倍型模型的推广
- 批准号:
0612099 - 财政年份:2006
- 资助金额:
$ 83.81万 - 项目类别:
Standard Grant
SGER: Discrete Event Simulation of Self-Assembly Kinetics
SGER:自组装动力学的离散事件模拟
- 批准号:
0320595 - 财政年份:2003
- 资助金额:
$ 83.81万 - 项目类别:
Standard Grant
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