CAREER: The Role of Ribosome Conformational Dynamics on the Mechanism of Protein Synthesis

这个项目的重点是最基本的细胞过程之一：蛋白质合成的核糖体，一个普遍保守的核糖核蛋白酶。Gonzalez实验室的最终目标是表征参与蛋白质合成的核糖体和其他生物分子的构象动力学，并利用这些数据阐明蛋白质合成的详细分子机制。新的荧光光谱方法被用来研究核糖体分子机器在单分子水平上，专注于构象动态区域的生物分子，其功能的重要性在很大程度上仍然是神秘的。使用单分子荧光，核糖体内的构象变化的机制被识别，量化并耦合到蛋白质合成的整个过程中的生化步骤。然而，达到这种分辨率水平需要合并分子生物学，生物化学，生物物理学，光学，显微镜，表面化学，微流体和统计数据分析等领域。因此，该实验室是高度跨学科的，并积极参与互补技术的发展，如微流体设计原理的应用，用于单分子荧光测量和数据分析的数学上强大的统计模型的发展，将扩大单分子荧光光谱的能力。除了在蛋白质合成领域的独特影响外，这项研究开发的一般原理直接适用于对细胞具有关键功能重要性的许多复杂生化反应的研究。冈萨雷斯实验室研究的跨学科性质提供了一个独特的机会，整合不同科学背景的学生，并刺激跨学科培训。为了在哥伦比亚大学更广泛的部门和大学社区实现类似的教育影响，冈萨雷斯教授正在将核酸和单分子生物物理学融入课程，参与设计一个共享的分子生物学设施，并为该设施的用户组织一个讨论论坛。冈萨雷斯还制定了一项长期的本科生/高中生研究计划，该计划由本科生和高中生研究人员专门执行的项目组成。这种跨学科研究项目各个方面的教育和实践经验将为学生在当代科学实验室环境中的未来工作做好准备。该项目由分子和细胞生物学和化学部门共同资助。

This project focuses on one of the most fundamental of cellular processes: protein synthesis by the ribosome, a universally conserved ribonucleoprotein enzyme. The ultimate goal in the Gonzalez laboratory is to characterize the conformational dynamics of the ribosome and other biomolecules involved in protein synthesis and utilize these data to elucidate the detailed molecular mechanism of protein synthesis. Novel fluorescence spectroscopic approaches are used to study the ribosomal molecular machine at the single-molecule level, focusing on conformationally dynamic regions of the biomolecule whose functional importance remains largely mysterious. Using single-molecule fluorescence, the mechanics of conformational changes within the ribosome are identified, quantified and coupled to biochemical steps in the overall process of protein synthesis. Achieving this level of resolution, however, requires merging the areas of molecular biology, biochemistry, biophysics, optics, microscopy, surface chemistry, microfluidics, and statistical data analysis. The laboratory is therefore highly interdisciplinary and is actively engaged in complementary technological developments, such as the application of microfluidic design principles to the sample cells used for single-molecule fluorescence measurements and the development of mathematically robust statistical models for data analysis that will expand the capabilities of single-molecule fluorescence spectroscopies. Beyond exclusive impact in the area of protein synthesis, the general principles developed by this research are directly applicable to the study of the numerous complex biochemical reactions that are of critical functional importance to the cell. The interdisciplinary nature of the research in the Gonzalez laboratory provides a unique opportunity to integrate students of varied scientific backgrounds and stimulate cross-discipline training. In order to achieve similar educational impact in the broader departmental and university communities at Columbia University, Prof. Gonzalez is integrating nucleic acid and single-molecule biophysics into the curriculum, participating in the design of a shared molecular biology facility, and organizing a discussion forum for users of this facility. Prof. Gonzalez has also put in place a long-term undergraduate/high-school student research program composed of projects to be exclusively executed by undergraduate and high-school student researchers. This educational and practical experience in all aspects of an interdisciplinary research project will prepare students for future work in contemporary scientific laboratory settings. This project is cofunded by the Divisions of Molecular and Cellular Biology and Chemistry.