Characterization of the Key Enzymes in Polycholorophenol Biodegradation

多氯酚是美国最普遍的有机污染物之一。几种类型的多氯酚主要通过在木材工业中用作防腐剂、在农业中用作除草剂以及在消费品中用作一般杀菌剂而被引入环境中。它们在环境中持续存在，因为卤素取代使它们难以被微生物降解。值得注意的是，我们已经鉴定并表征了参与这些有毒化合物降解的几种微生物酶。这些酶的 PI 表征揭示了几种新的反应，促进了从生化和结构角度的进一步研究。 PI 的长期目标是对降解机制有一个基本的了解，并定义这些外源污染物生物降解途径中所有参与酶的底物特异性参数。当前研究的目标集中在三种单加氧酶（TcpA、TftD 和 PcpB）和一种特殊双加氧酶（PcpA）的比较研究，所有这些酶都催化多氯酚生物降解中的脱氯步骤。在这些多氯芳香族化合物的分解过程中，脱氯至关重要，因为在开环和随后的矿化之前必须进行部分或完全脱氯。然而，酶法脱氯尚未得到充分研究。这项研究提供了对这些酶催化的不寻常特异性和反应的全面了解。它有助于确定修饰活性位点结构以扩大底物范围或加速动力学的可行性。 这可能会导致更好的清理策略来修复有毒环境场所。更广泛的影响这项研究正在提高能够对外源污染物进行生物修复的生物降解酶的催化效率和底物特异性范围。它通过结合生化、遗传、生物物理和机械专业知识，采用多学科方法来解决这个问题。 包括埃米利亚莫·桑切斯在内的两名研究生和几名本科生正在参与这项研究。 高中生还通过华盛顿州立大学现有的 NSF 资助的 K-12 外展项目参与研究，将酶学、结构生物学和环境微生物学带入高中课堂和当地的探索中心。

Polychlorophenols are among the most pervasive organic pollutants in the United States. Several types of polychlorophenols are primarily introduced into the environment through their use as preservatives in the wood industry, as herbicides in agriculture, and as general biocides in consumer products. They persist in the environment because halogen substitution makes them recalcitrant to microbial degradation. Significantly we have identified and characterized several microbial enzymes involved in the degradation of those toxic compounds. The PIs characterization of these enzymes has revealed several novel reactions that prompt further investigation from both biochemical and structural perspectives. The PIs long-term goal is to develop a fundamental understanding of the degradation mechanisms and to define the parameters for the substrate specificity of all the participating enzymes in the biodegradation pathway of those xenobiotic pollutants. The target of the current research is focused on the comparative investigation of three monooxygenases (TcpA, TftD and PcpB) and one special dioxygenase (PcpA), all of which catalyze the dechlorination step in polychlorophenol biodegradations. In the breakdown process of those polychlorinated aromatic compounds, dechlorination is critical because partial or complete dechlorination must occur before ring-cleavage and the subsequent mineralization. However, enzymatic dechlorination has not been significantly investigated. This investigation is providing a comprehensive understanding of the unusual specificities and reactions catalyzed by those enzymes. It is contributing to the determination of the feasibility of modification of the structures of the active sites to broaden the substrate range or accelerate the kinetics. This may lead to better clean-up strategies for remediating toxic environmental sites. Broader impactsThis research is improving the catalytic efficiency and range of substrate specificity for the biodegradative enzymes capable of bioremediation of xenobiotic pollutants. It is applying a multidisciplinary approach to the problem by combining biochemical, genetic, biophysical and mechanistic expertise. Two graduate students, including Emiliamo Sanchez, and several undergraduate students are participating in the research. High school students are also involved in the research through existing NSF-funded K-12 outreach programs at Washington State University, bringing enzymology, structural biology and environmental microbiology to the high school classroom and local Discovery Center.