Development of an Ionic Liquid Force Field for QM/MM Simulations
用于 QM/MM 模拟的离子液体力场的开发
基本信息
- 批准号:1149604
- 负责人:
- 金额:$ 27.51万
- 依托单位:
- 依托单位国家:美国
- 项目类别:Standard Grant
- 财政年份:2012
- 资助国家:美国
- 起止时间:2012-05-01 至 2015-10-31
- 项目状态:已结题
- 来源:
- 关键词:
项目摘要
Orlando Acevedo of Auburn University is supported by the Chemical Structure, Dynamics, and Mechanisms program and the NSF EPSCoR office for research to develop a comprehensive set of force field parameters for the simulation of hundreds of widely used ionic liquid combinations and next-generation alternatives with superior biodegradation and lower toxicity. Ionic liquids are a unique class of solvent, generally defined as a material containing only ionic species with a melting point below 100 deg. C. Mixed quantum and molecular mechanics (QM/MM) Monte Carlo calculations featuring the custom force field and free-energy perturbation theory are used to elucidate how ionic liquids operate to enhance rates and/or shift mechanisms for three reaction categories: aromatic nucleophilic substitutions (SNAr), base-induced beta-eliminations, and keto-enol tautomerizations. The research objective is to establish a firm understanding of the intermolecular interactions occurring between ionic liquids and important chemical reaction classes.With over 100 million pounds of chemical waste treated yearly, a better understanding of how to optimize recyclable ionic liquids for chemical reactions has the potential to impact society from the lab bench top to large-scale industrial manufacturing. In addition, this project expands the number of ionic liquid force field parameters available for simulation. The new parameters and equilibrated systems will be made freely available to the scientific community through a website. This proposal introduces computational chemistry to high school and undergraduate students through a hands-on "Instant Supercomputer!¨ workshop featuring the construction of a temporary supercomputer. The project will expose students to cutting edge research and will present an opportunity to do "public science" to solve a research problem with a real time audience, rather than disseminating prior results.
奥本大学的奥兰多阿切韦多得到了化学结构、动力学和机制项目以及NSF EPSCoR办公室的支持,研究开发一套全面的力场参数,用于模拟数百种广泛使用的离子液体组合和具有上级生物降解性和较低毒性的下一代替代品。离子液体是一类独特的溶剂,通常定义为仅含有熔点低于100 ℃的离子物质的材料。C.混合量子和分子力学(QM/MM)蒙特卡罗计算具有自定义力场和自由能微扰理论用于阐明离子液体如何操作,以提高速率和/或三个反应类别的移位机制:芳香族亲核取代(SNAr),碱诱导的β-消除,酮-烯醇互变异构。该研究的目标是建立对离子液体和重要化学反应类别之间发生的分子间相互作用的深刻理解。每年处理的化学废物超过1亿磅,更好地了解如何优化可回收的离子液体用于化学反应,有可能影响从实验室工作台到大规模工业生产的社会。此外,该项目扩展了可用于模拟的离子液体力场参数的数量。新的参数和平衡系统将通过网站免费提供给科学界。该提案介绍了计算化学高中和本科生通过动手“即时超级计算机!工作坊以建造临时超级计算机为特色。该项目将使学生接触前沿研究,并将提供一个机会,做“公共科学”,以解决一个研究问题与真实的时间观众,而不是传播以前的结果。
项目成果
期刊论文数量(0)
专著数量(0)
科研奖励数量(0)
会议论文数量(0)
专利数量(0)
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Orlando Acevedo其他文献
Birds of Río Tame of the Andes-Orinoco transitional region: species check-list, biogeographic relationship and conservation
安第斯山脉-奥里诺科过渡地区的里奥坦梅鸟类:物种清单、生物地理关系和保护
- DOI:
10.59517/oc.e368 - 发表时间:
2021 - 期刊:
- 影响因子:0
- 作者:
Orlando Acevedo - 通讯作者:
Orlando Acevedo
Diferencias en paisajes sonoros de sistemas silvopastoriles y potreros tradicionales del piedemonte llanero, Meta, Colombia
哥伦比亚梅塔的皮埃蒙特利亚内罗 sistemas silvopastoriles y potreros 传统的 paisajes sonoros
- DOI:
- 发表时间:
2021 - 期刊:
- 影响因子:0
- 作者:
Andrea Morales Rozo;Diego J. Lizcano;Sergio Montoya Arango;Álvaro Velasquez Suarez;Evelyn Alvarez Daza;Orlando Acevedo - 通讯作者:
Orlando Acevedo
Molecular evolution of the VacA p55 binding domain of Helicobacter pylori in mestizos from a high gastric cancer region of Colombia
哥伦比亚胃癌高发区混血儿中幽门螺杆菌 VacA p55 结合域的分子进化
- DOI:
- 发表时间:
2019 - 期刊:
- 影响因子:2.7
- 作者:
A. Gutiérrez;M. Bravo;Orlando Acevedo;S. Backert - 通讯作者:
S. Backert
Molecular orbital differentiation of agonist and antagonist activity in the GlycineB-iGluR-NMDA receptor.
GlycineB-iGluR-NMDA 受体激动剂和拮抗剂活性的分子轨道分化。
- DOI:
10.1016/j.ejmech.2009.01.013 - 发表时间:
2009 - 期刊:
- 影响因子:6.7
- 作者:
Juvenal Yosa;M. Blanco;Orlando Acevedo;Leonardo Lareo - 通讯作者:
Leonardo Lareo
Seed-fruit multiomics integration of sweet cherry cultivars with different maturity time shows alternative molecular landscapes at the transition from development to ripening, unveiling a role of small RNAs, SPLs, lignin and inositol pathways
对不同成熟时间的甜樱桃品种进行种子-果实多组学整合分析,揭示了从发育到成熟转变过程中不同的分子特征,表明小RNA、SBP转录因子(SPL)、木质素和肌醇代谢途径在此过程中发挥作用 。
- DOI:
10.1016/j.scienta.2025.114099 - 发表时间:
2025-03-01 - 期刊:
- 影响因子:4.200
- 作者:
Jonathan E. Maldonado;Orlando Acevedo;Mirna Melo;Carlos Núñez;Matías Zavala;Marcela Menares;Romina Pedreschi;Excequel Ponce;José Manuel Donoso;Lee Ann Meisel;Nathalie Kuhn - 通讯作者:
Nathalie Kuhn
Orlando Acevedo的其他文献
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{{ truncateString('Orlando Acevedo', 18)}}的其他基金
Machine Learning Tools for Biofuel Creation and Purification using Ionic Fluids
使用离子流体制造和纯化生物燃料的机器学习工具
- 批准号:
2102038 - 财政年份:2021
- 资助金额:
$ 27.51万 - 项目类别:
Continuing Grant
Collaborative Research: Mechanism and Target Recognition of Protein Arginine Methyltransferases (PRMTs)
合作研究:蛋白质精氨酸甲基转移酶(PRMT)的机制和靶点识别
- 批准号:
2003615 - 财政年份:2020
- 资助金额:
$ 27.51万 - 项目类别:
Standard Grant
Development of an Ionic Liquid Force Field for QM/MM Simulations
用于 QM/MM 模拟的离子液体力场的开发
- 批准号:
1561010 - 财政年份:2015
- 资助金额:
$ 27.51万 - 项目类别:
Standard Grant
Advancing QM/MM Methods to Model Reactions in Ionic Fluids
推进 QM/MM 方法来模拟离子流体中的反应
- 批准号:
1562205 - 财政年份:2015
- 资助金额:
$ 27.51万 - 项目类别:
Standard Grant
Collaborative Research: Protein Arginine Methylation
合作研究:蛋白质精氨酸甲基化
- 批准号:
1626860 - 财政年份:2015
- 资助金额:
$ 27.51万 - 项目类别:
Continuing Grant
Advancing QM/MM Methods to Model Reactions in Ionic Fluids
推进 QM/MM 方法来模拟离子流体中的反应
- 批准号:
1464918 - 财政年份:2015
- 资助金额:
$ 27.51万 - 项目类别:
Standard Grant
Collaborative Research: Protein Arginine Methylation
合作研究:蛋白质精氨酸甲基化
- 批准号:
1412358 - 财政年份:2014
- 资助金额:
$ 27.51万 - 项目类别:
Continuing Grant
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