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SI2-CHE: CCP-SAS - Collaborative Computing consortium for advanced analyses of structural data in chemical biology and soft condensed matter

SI2-CHE: CCP-SAS - Collaborative Computing consortium for advanced analyses of structural data in chemical biology and soft condensed matter
SI2-CHE:CCP-SAS - 用于化学生物学和软凝聚态结构数据高级分析的协作计算联盟
批准号:
1265817
负责人:
Emre Brookes
金额:
$26.39万
依托单位国家:
美国
项目类别:
Standard Grant
财政年份:
2013
资助国家:
美国
项目状态:
已结题
起止时间:
2013-06-01 至 2018-05-31

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中文摘要
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英文摘要
An international team consisting of Paul Butler (University of Tennessee, Knoxville and NIST), Jianhan Chen (Kansas State University), Emre Brooks (University of Texas Health Science Center, San Antonio) and their UK collaborators led by Stephen J. Perkins (University College, London) are supported through the SI2-CHE program. The object of this project is to provide a web-based GUI front-end with a high-performance back-end to increase the accessibility of advanced atomistic modeling of scattering data by novice users. Advanced analysis modules and new simulation methods including implicit solvent models are being developed to increase the accuracy of scattering calculations and simulation protocols. Software is being developed and disseminated with continual feedback from the research teams' large international user-base. These efforts leverage an international user and developer community that use high-performance computing resources on a wide-range of cutting-edge chemical problems. A typical bench scientist purifies and characterizes samples, collects the small angle x-ray scattering (SAXS), small angle neutron scattering (SANS), or analytical ultracentrifugation (AUC) data, and interprets the results using simplistic models. It is rare that the same individual also has the skills to use advanced atomistic simulation software. The CCP-SAS project is focused on developing an easy-to-use modeling package that enables users to generate physically accurate atomistic models, calculate scattering profiles and compare results to experimental scattering data sets in a single web-based software suite. This enables a broad range of scattering scientists to access often complicated simulation and scattering analysis methods seamlessly thus providing a significant acceleration to the discovery process. The US based investigators are supported by the CHE and ACI divisions within NSF; the UK based investigators are supported by the EPSRC.
期刊论文(3)
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科研奖励(0)
会议论文
GenApp, Containers and Abaco: Technical Paper
GenApp、Containers 和 Abaco:技术论文
DOI: 10.1145/3332186.3332191
发表时间: 2019
期刊: Proceedings of the Practice and Experience in Advanced Research Computing on Rise of the Machines (learning
影响因子: --
作者: [Brookes, Emre, Stubbs, Joe]
通讯作者: Stubbs, Joe
Measuring Success: How Science Gateways Define Impact
衡量成功:科学网关如何定义影响力
DOI: --
发表时间: 2019
期刊: Proceedings of Gateways 2019
影响因子: --
作者: [Wilkins-Diehr, Nancy, Miller, Mark, Brookes, Emre H, Arora, Ritu, Chourasia, Amit, Calyam, Prasad, Jennewein, Douglas M, Nandigam, Viswanath, LaMar, M Drew, Cleveland, Sean B]
通讯作者: Cleveland, Sean B
Enabling rich data sharing for Science Gateways via the SeedMeLab platform
通过 SeedMeLab 平台实现科学网关的丰富数据共享
DOI: 10.17605/osf.io/wv3bf
发表时间: 2019
期刊: Proceedings of Gateways 2019
影响因子: --
作者: [Chourasia, Amit, Nadeau, David, Luo, Jiaping, Chen, Tony, Miller, Mark, Brookes, Emre H]
通讯作者: Brookes, Emre H
SI2-SSE: GenApp - A Transformative Generalized Application Cyberinfrastructure
  • 批准号:
    1912444
  • 项目类别:
    Standard Grant
  • 资助金额:
    $19.72万
  • 财政年份:
    2018
  • 负责人:
    Emre Brookes
  • 依托单位:
SI2-SSE: GenApp - A Transformative Generalized Application Cyberinfrastructure
国内基金
海外基金
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  • 批准号:
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  • 项目类别:
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  • 资助金额:
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  • 批准年份:
    2014
  • 负责人:
    李叶
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OxyS非编码RNA对秀丽线虫che-2基因表达与行为的调控
  • 批准号:
    31071132
  • 项目类别:
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  • 资助金额:
    35.0万元
  • 批准年份:
    2010
  • 负责人:
    单革
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  • 批准号:
    10801007
  • 项目类别:
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  • 资助金额:
    17.0万元
  • 批准年份:
    2008
  • 负责人:
    马瑞芹
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