Direct Identification and Characterization of Marine Heterotrophic Nitrogen Fixers by Stable Isotope Probing

通过稳定同位素探测直接识别和表征海洋异养固氮剂

• 批准号: 1341178
• 负责人: Douglas Capone
• 金额: $ 29.98万
• 依托单位: University of Southern California
• 依托单位国家: 美国
• 项目类别: Standard Grant
• 财政年份: 2013
• 资助国家: 美国
• 起止时间: 2013-06-01 至 2016-05-31
• 项目状态: 已结题
• 来源: https://www.nsf.gov/awardsearch/showAward?AWD_ID=1341178&HistoricalAwards=false
• 关键词: Direct; Identification; Characterization; Marine; Heterotrophic

The nitrogen cycle in the ocean is extremely complex and it continues to yield surprises. Knowledge gained in this project will directly contribute to resolving an unsettled and important question regarding the sources of nitrogen in the oceans because imbalances in nitrogen budgets have raised questions on how well we have quantified all nitrogen inputs and removal. While nitrogen-fixing cyanobacteria have long been recognized as important contributors to nitrogen fixation in the oceans heterotrophic nitrogen-fixing bacteria (HNFB) are a poorly characterized, but potentially important, component of the marine nitrogen-fixing community. Using advanced methodologies, this project will develop the means to obtain a new understanding of novel, active, HNFB in the ocean. The identification of these organisms and the assessment of their phylogenetic diversity and biogeochemical significance will provide important insights about their role in the marine nitrogen cycle. The project will develop a novel stable isotope probing (SIP) methodology coupled with high-throughput sequencing. SIP exploits the uptake of isotopically enriched substrates into nucleic acids (e.g., DNA) while high-throughput sequencing should allow the identification of nitrogen-fixing bacteria generally, and HNFB specifically, so that the principal investigator can directly link the biogeochemistry of nitrogen with the phylogeny of those nitrogen-fixers. The objective of this project is to provide a proof of concept effort and identify important HNFB lineages using this novel approach and begin to develop quantitative estimates for the contribution of HNFB populations to marine nitrogen-fixation and the nitrogen cycle. This project will foster the development of a graduate student who will work on all aspects of the project for his PhD and the work will be presented at science conferences and in public outreach venues. Undergraduates will also work on the project under the guidance of the graduate student and principal investigator. The participants will also engage with the USC Young Researchers Program (YRP), which recruits high school students from diverse and underprivileged local schools for summer research experiences. Students will be guided in the laboratory-based aspects of this project, and present their work at an YRP symposium. The principal investigator will also continue to participate in science curriculum development workshops of the Center for Ocean Sciences Education Excellence-West program.

海洋中的氮循环极其复杂，它不断产生令人惊讶的结果。在这个项目中获得的知识将直接有助于解决一个悬而未决的重要问题，即海洋中氮的来源，因为氮预算的不平衡提出了我们如何量化所有氮的输入和去除的问题。虽然固氮蓝藻长期以来一直被认为是海洋固氮的重要贡献者，但异养固氮细菌（HNFB）是海洋固氮群落的一个特征不明确但潜在重要的组成部分。利用先进的方法，该项目将开发手段，以获得新的，积极的，HNFB在海洋中的新的理解。这些生物的识别和评估其系统发育多样性和海洋地球化学意义将提供重要的见解，他们在海洋氮循环中的作用。该项目将开发一种新的稳定同位素探测（SIP）方法，并结合高通量测序。SIP利用同位素富集的底物摄取到核酸中（例如，DNA），而高通量测序应该允许鉴定固氮细菌一般，和HNFB具体，使主要研究人员可以直接联系氮的生物地球化学与这些固氮菌的生物发生。本项目的目标是提供一个概念的努力证明，并确定重要的HNFB谱系使用这种新的方法和开始发展的HNFB人口的贡献海洋固氮和氮循环的定量估计。该项目将促进研究生的发展，该研究生将为他的博士学位研究该项目的各个方面，并将在科学会议和公共宣传场所展示该工作。本科生也将在研究生和首席研究员的指导下从事该项目。参与者还将参与南加州大学青年研究人员计划（YRP），该计划从当地不同的贫困学校招募高中生进行暑期研究。学生将在本项目的实验室为基础的方面进行指导，并在YRP研讨会上介绍他们的工作。首席研究员还将继续参加海洋科学教育中心的科学课程开发研讨会。