Unraveling the nature of inter and intra-molecular interactions

揭示分子间和分子内相互作用的本质

• 批准号: 1363342
• 负责人: Martin Head-Gordon
• 金额: $ 42万
• 依托单位: University of California-Berkeley
• 依托单位国家: 美国
• 项目类别: Standard Grant
• 财政年份: 2014
• 资助国家: 美国
• 起止时间: 2014-06-15 至 2018-05-31
• 项目状态: 已结题
• 来源: https://www.nsf.gov/awardsearch/showAward?AWD_ID=1363342&HistoricalAwards=false
• 关键词: Unraveling; nature; inter; intra; molecular

Martin Head-Gordon of the University of California, Berkeley is supported by an award from the Chemical Theory, Models and Computational Methods program in the Chemistry Division to develop computational tools that provide physical insight into the numerical results of quantum chemistry calculations. Roughly half of new research publications in chemistry today use quantum chemistry calculations as a complement to experiment, to predict chemical reaction mechanisms, structure, and diverse molecular properties. Most research on quantum chemistry methodology is focused on improvements in the numerical methods and algorithms to aid such applications. While very valuable because such research enables better predictions, the resulting predictions may yield only numbers and not physical insight. In contrast, the tools developed in this project are focused interpreting the results of the quantum chemistry calculations. For example, a computed interaction energy, such as the binding of a molecule to an active site of an enzyme, can be decomposed into additive contributions which have different physical origins, such as permanent charge-charge interactions, induced interactions, and charge-transfer effects. Seeing which contributions are dominant in a given molecular interaction can explain the origin of the binding, and thus provide a rational basis for tuning the interaction by making chemical modifications. There are many uses for these tools ranging from increased understanding of simple bonding processes, to understanding new types of bonding such as halogen bonds, to the desired goal of being able to rationally design improved catalysts or drugs. The theory of such a breakdown is called an energy decomposition analysis (EDA). There are only a few other successful existing EDA methods, which are widely used in quantum chemistry. Each of these has demonstrable limitations, which motivates this project on the development and testing of a new and improved EDA. At a more technical level, the objective is to develop a new generation EDA that lifts three key limitations of an existing EDA based on absolutely localized molecular orbitals (ALMO-EDA). This should yield more reliable interpretations on broader classes of molecular problems where chemists seek insight in addition to numbers. The first objective is the development of a convergent method for electrostatic polarization which does not rely on an underlying atomic orbital (AO) basis to define polarization in the overlapping regime. This method will therefore have a well-defined basis set limit. The second goal is to use the new polarization treatment together with a new non-perturbative treatment of charge-transfer to extend the EDA to bonded intra-molecular interactions. Since such interactions are very strong and yet can involve cancellation between even larger positive and negative terms (e.g. positive repulsions and geometric distortion vs negative polarization and charge-transfer), the development of an adiabatic generalization of the EDA is also a priority. This adiabatic EDA will be defined so that all contributions are negative semi-definite, such that interpretation of strong interactions is more straightforward. The third principal objective is to develop an extension of the EDA to go beyond the framework of single determinant wave functions (i.e. Hartree-Fock or density functional theory). To treat wave function methods that include correlation correctly requires developing theory for the correlation contribution to the frozen and polarization interactions, as well as a dispersion contribution that is negative semi-definite. The initial target is second order Moller-Plesset theory, but it will also be highly desirable to subsequently explore extensions to coupled cluster theory.

加州大学伯克利分校的Martin Head-Gordon得到了化学部化学理论、模型和计算方法项目的支持，该奖项旨在开发计算工具，为量子化学计算的数值结果提供物理见解。今天，大约一半的新的化学研究出版物使用量子化学计算作为实验的补充，以预测化学反应机理、结构和不同的分子性质。量子化学方法论的大部分研究都集中在数值方法和算法的改进上，以帮助这些应用。虽然这类研究非常有价值，因为这样的研究能够做出更好的预测，但由此产生的预测可能只产生数字，而不是物理洞察力。相比之下，在这个项目中开发的工具侧重于解释量子化学计算的结果。例如，计算出的相互作用能，如分子与酶活性部位的结合，可以分解为具有不同物理来源的相加贡献，如永久电荷相互作用、诱导相互作用和电荷转移效应。看到在给定的分子相互作用中哪些贡献是主导的，可以解释结合的起源，从而为通过化学修饰来调节相互作用提供合理的依据。这些工具有许多用途，从增加对简单键合过程的了解，到了解卤素键等新类型的键合，到能够合理设计改进的催化剂或药物的预期目标。这种分解的理论被称为能量分解分析(EDA)。在量子化学中得到广泛应用的EDA方法屈指可数。其中每一个都有明显的局限性，这促使本项目开发和测试一个新的和改进的EDA。在更高的技术层面上，目标是开发新一代EDA，它打破了现有基于绝对定域分子轨道的EDA(Almo-EDA)的三个关键限制。这应该会对更广泛类别的分子问题产生更可靠的解释，化学家们在这些问题上寻求除数字之外的洞察力。第一个目标是开发一种收敛的静电极化方法，该方法不依赖于基本的原子轨道(AO)基础来定义重叠区域中的极化。因此，这种方法将有一个明确定义的基数集限制。第二个目标是使用新的极化处理和新的非微扰电荷转移处理，将EDA扩展到成键的分子内相互作用。由于这种相互作用非常强，但可能涉及更大的正负项之间的抵消(例如，正排斥和几何扭曲与负极化和电荷转移)，因此开发EDA的绝热推广也是一个优先事项。这个绝热EDA将被定义为所有的贡献都是负的半定的，这样对强相互作用的解释就更直接了。第三个主要目标是发展EDA的扩展，以超越单一行列式波函数(即Hartree-Fock或密度泛函理论)的框架。为了正确地处理包含关联的波函数方法，需要发展对冻结和偏振相互作用的关联贡献以及负半定的色散贡献的理论。最初的目标是二阶Moller-Plesset理论，但随后探索耦合团簇理论的扩展也是非常可取的。

项目成果

Nucleophilic Aromatic Addition in Ionizing Environments: Observation and Analysis of New C–N Valence Bonds in Complexes between Naphthalene Radical Cation and Pyridine

电离环境中的亲核芳香加成：萘自由基阳离子与吡啶络合物中新 C-N 价键的观察和分析

• DOI: 10.1021/jacs.7b05756
• 发表时间: 2017
• 期刊: Journal of the American Chemical Society
• 影响因子: 15
• 作者: Peverati, Roberto;Platt, Sean P.;Attah, Isaac K.;Aziz, Saaudallah G.;El-Shall, M. Samy;Head-Gordon, Martin
• 通讯作者: Head-Gordon, Martin

Assessing many-body contributions to intermolecular interactions of the AMOEBA force field using energy decomposition analysis of electronic structure calculations

• DOI: 10.1063/1.4999905
• 发表时间: 2017-10-28
• 期刊: JOURNAL OF CHEMICAL PHYSICS
• 影响因子: 4.4
• 作者: Demerdash, Omar;Mao, Yuezhi;Head-Gordon, Teresa
• 通讯作者: Head-Gordon, Teresa

On the Computational Characterization of Charge-Transfer Effects in Noncovalently Bound Molecular Complexes

• DOI: 10.1021/acs.jctc.7b01256
• 发表时间: 2018-05-01
• 期刊: JOURNAL OF CHEMICAL THEORY AND COMPUTATION
• 影响因子: 5.5
• 作者: Mao, Yuezhi;Ge, Qinghui;Head-Gordon, Martin
• 通讯作者: Head-Gordon, Martin

Compressed representation of dispersion interactions and long-range electronic correlations

色散相互作用和远程电子关联的压缩表示

• DOI: 10.1063/1.4997186
• 发表时间: 2017
• 期刊: The Journal of Chemical Physics
• 作者: Gonthier, Jérôme F.;Head-Gordon, Martin
• 通讯作者: Head-Gordon, Martin