CC*DNI DIBBS: Merging Science and Cyberinfrastructure Pathways: The Whole Tale

尽管越来越多的人认识到需要分享研究过程的所有方面，但今天的学术出版物仍然大多与用于产生已发表结果和结论的基础数据和代码脱节。随着数据变得更加开放和可传输，出现了第二层研究成果，将研究出版物与相关数据联系起来，可能还包括其来源。紧随这一趋势的是一个新的第三层：通过共享将方法描述与可执行代码和数据联系起来的完整的计算叙述，来交流调查过程本身，从而引入了一个可重复科学和加速知识发现的新时代。在整个故事(WT)项目中，所有这些组成部分都是链接的，并可从学术出版物中获取。第三层是宽泛的，通过科学途径(例如，天文学、生命和地球科学、材料科学、社会科学)包括许多研究社区，以及利用相互关联的网络基础设施途径和共享技术的深度研究。该项目的目标是加强第二层研究成果，并建立一个强大的第三层，整合故事的所有部分，通过以下方式传达可重复的科学研究的整体体验：(1)通过流行的前端，例如数字笔记本(IPython、Jupyter)、传统脚本环境和工作流系统，暴露现有的网络基础设施；(2)为无缝访问不同的后端能力，包括来自数据网联盟和数据基础设施构建块(DIBBS)项目，开发必要的“软件粘合剂”；以及(3)通过使科学家能够在其通常的编程环境中创建计算性叙述，并通过基础网络基础设施的新功能(例如，身份管理、高级数据访问和来源API以及基于数字对象识别符的数据出版物)来增强完整的数据到出版物的生命周期。这些技术和接口将使用一组不同的数据类型、技术框架和一系列科学领域的早期采用者进行开发和压力测试。

Scholarly publications today are still mostly disconnected from the underlying data and code used to produce the published results and findings, despite an increasing recognition of the need to share all aspects of the research process. As data become more open and transportable, a second layer of research output has emerged, linking research publications to the associated data, possibly along with its provenance. This trend is rapidly followed by a new third layer: communicating the process of inquiry itself by sharing a complete computational narrative that links method descriptions with executable code and data, thereby introducing a new era of reproducible science and accelerated knowledge discovery. In the Whole Tale (WT) project, all of these components are linked and accessible from scholarly publications. The third layer is broad, encompassing numerous research communities through science pathways (e.g., in astronomy, life and earth sciences, materials science, social science), and deep, using interconnected cyberinfrastructure pathways and shared technologies. The goal of this project is to strengthen the second layer of research output, and to build a robust third layer that integrates all parts of the story, conveying the holistic experience of reproducible scientific inquiry by (1) exposing existing cyberinfrastructure through popular frontends, e.g., digital notebooks (IPython, Jupyter), traditional scripting environments, and workflow systems; (2) developing the necessary 'software glue' for seamless access to different backend capabilities, including from DataNet federations and Data Infrastructure Building Blocks (DIBBs) projects; and (3) enhancing the complete data-to-publication lifecycle by empowering scientists to create computational narratives in their usual programming environments, enhanced with new capabilities from the underlying cyberinfrastructure (e.g., identity management, advanced data access and provenance APIs, and Digital Object Identifier-based data publications). The technologies and interfaces will be developed and stress-tested using a diverse set of data types, technical frameworks, and early adopters across a range of science domains.