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Collaborative Research: Diversity of Physcomitrium pyriforme in North America and Europe: significance of autopolyploidy within a phylogenomic and experimental framework

Collaborative Research: Diversity of Physcomitrium pyriforme in North America and Europe: significance of autopolyploidy within a phylogenomic and experimental framework
合作研究:北美和欧洲梨形小须藻的多样性:系统发育和实验框架内同源多倍体的重要性
批准号:
1753800
负责人:
Matthew Johnson
金额:
$41.77万
依托单位:
依托单位国家:
美国
项目类别:
Standard Grant
财政年份:
2018
资助国家:
美国
项目状态:
已结题
起止时间:
2018-06-01 至 2023-12-31

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中文摘要
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英文摘要
This project will investigate the effects of genome duplication in plants. Many plant species, including some agricultural crops, have arisen as a result of genome duplication. This natural event results in offspring having genomes that are doubled in content or more as compared to their parents and may have provided opportunities for innovation during plant evolution. However, the short- and long-term consequences of genome duplication in wild plants are not well understood. This research will investigate the natural rate of genome duplication in a wild moss species distributed in North America and Europe. Researchers will create experimental, genome-duplicated offspring in the laboratory to measure how their morphology and reproduction differs from that of their parents. They will then determine if and how duplicated genomes may change over time by comparing the experimental, genome-duplicated offspring to those that occur naturally. Researchers will train undergraduate and graduate students, including members of under-represented groups, and support the professional development of early-career researchers. They will also host regional outreach lectures for K-12 teachers about best-practices in evolutionary biology education. Researchers will engage the public online using the citizen-science iNaturalist platform and will create bilingual (Spanish/English) blog posts about moss biology and polyploid evolution. This project will expand our understanding of the consequences of autopolyploid evolution in plants. Researchers will use as an experimental model organism the moss species Physcomitrium pyriforme (Funariaceae, the Funaria moss family), which harbors a morphologically-diverse complex of seven karyotypes worldwide. The species is annual, bisexual, selfing, and is easily grown in the laboratory. Unlike most other plant model organisms, its genome content can be doubled with precision in vitro to create autopolyploid offspring. Researchers will compare reproductive barriers among naturally-occurring and artificially-induced autopolyploids as well as their homoploid progenitors. Project outcomes will include a phylogeny of the Physcomitrium pyriforme species-complex based on genome sequence data, an estimate of ploidy changes within the complex over evolutionary time and among populations today, and the description of new species. Researchers will further develop the HybPiper bioinformatics data analysis platform and train other US scientists in this method to enhance research capacity. The project will strengthen research collaborations among US institutions and build natural-history collections.This award reflects NSF's statutory mission and has been deemed worthy of support through evaluation using the Foundation's intellectual merit and broader impacts review criteria.
期刊论文(7)
专著(0)
科研奖励(0)
会议论文
Phylogenomics resolves the rediscovered Himalayan endemic Brachymeniopsis gymnostoma (Bryophyta, Funariaceae), as a species of Entosthodon , prompting also the transfer of Clavitheca poeltii
系统基因组学解析了重新发现的喜马拉雅特有的 Brachymeniopsis gynostoma(苔藓植物,Funariaceae),作为 Entosthodon 的一种,也促进了 Clavitheca poeltii 的转移
DOI: 10.1002/tax.13106
发表时间: 2023
期刊: TAXON
影响因子: 3.4
作者: [Zhang, Li, Zuo, Qin, Ma, Wen‐Zhang, Shevock, James R., Patel, Nikisha, Johnson, Matthew, Medina, Rafael, Wilding, Nicholas, Goffinet, Bernard]
通讯作者: Goffinet, Bernard
Vindication of Physcomitrium pygmaeum (Funariaceae), an elusive and endangered moss from North America's Great Basin
Physcomitrium pygmaeum(葫芦科)的辩护,这是一种来自北美大盆地的难以捉摸的濒临灭绝的苔藓
DOI: 10.1639/0007-2745-125.4.528
发表时间: 2022
期刊: The Bryologist
影响因子: --
作者: [Medina, Rafael, Johnson, Matthew G., Patel, Nikisha, Tocci, Genevieve E., Toren, David R., Goffinet, Bernard]
通讯作者: Goffinet, Bernard
Frequent allopolyploidy with distant progenitors in the moss genera Physcomitrium and Entosthodon (Funariaceae) identified via subgenome phasing of targeted nuclear genes
通过目标核基因的亚基因组定相鉴定出苔藓属 Physcomitrium 和 Entosthodon (Funariaceae) 中远缘祖先的频繁异源多倍体
DOI: 10.1093/evolut/qpad171
发表时间: 2023
期刊: Evolution
影响因子: 3.3
作者: [Patel, Nikisha, Medina, Rafael, Williams, Lindsay D., Lemieux, Olivia, Goffinet, Bernard, Johnson, Matthew G., Betancourt, ed., Andrea, Chapman, ed., Tracey]
通讯作者: Chapman, ed., Tracey
DOI: 10.1111/2041-210x.14072
发表时间: 2023-03-13
期刊: METHODS IN ECOLOGY AND EVOLUTION
影响因子: 6.6
作者: [Freyman, William A., Johnson, Matthew G., Rothfels, Carl J.]
通讯作者: Rothfels, Carl J.
SBIR Phase I: Scalable Magnetically-Geared Modular Space Manipulator for In-space Manufacturing and Active Debris Remediation Missions
  • 批准号:
    2335583
  • 项目类别:
    Standard Grant
  • 资助金额:
    $26.18万
  • 财政年份:
    2024
  • 负责人:
    Matthew Johnson
  • 依托单位:
Collaborative Research: Evolution of acquired phototrophy by organelle sequestration in Mesodinium ciliates
  • 批准号:
    2344640
  • 项目类别:
    Standard Grant
  • 资助金额:
    $66.59万
  • 财政年份:
    2024
  • 负责人:
    Matthew Johnson
  • 依托单位:
Collaborative Research: Quantifying the impact of oxylipin chemical signaling on microbial community dynamics and biogeochemical cycling
  • 批准号:
    2231922
  • 项目类别:
    Continuing Grant
  • 资助金额:
    $40.04万
  • 财政年份:
    2023
  • 负责人:
    Matthew Johnson
  • 依托单位:
Elucidating the transient nature of electron transfer complexes at the single-molecule level
  • 批准号:
    BB/V006630/1
  • 项目类别:
    Research Grant
  • 资助金额:
    $58.67万
  • 财政年份:
    2021
  • 负责人:
    Matthew Johnson
  • 依托单位:
国内基金
海外基金
Research on Quantum Field Theory without a Lagrangian Description
  • 批准号:
    24ZR1403900
  • 项目类别:
    省市级项目
  • 资助金额:
    --
  • 批准年份:
    2024
  • 负责人:
    SATOSHI NAWATA
  • 依托单位:
Cell Research
Cell Research
Cell Research (细胞研究)