REU Site: Computational Modeling and Simulation in Applied Sciences

REU 网站：应用科学中的计算建模和仿真

• 批准号: 1757493
• 负责人: Wandi Ding
• 金额: $ 24.15万
• 依托单位: Middle Tennessee State University
• 依托单位国家: 美国
• 项目类别: Standard Grant
• 财政年份: 2018
• 资助国家: 美国
• 起止时间: 2018-09-01 至 2023-09-30
• 项目状态: 已结题
• 来源: https://www.nsf.gov/awardsearch/showAward?AWD_ID=1757493&HistoricalAwards=false
• 关键词: REU; Site; Computational; Modeling; Simulation

This interdisciplinary REU Site program will prepare undergraduates for research, employment, and advanced study in the emerging discipline of Computational Science - a discipline that is critical not only for the advancement of science, but for our nation's economic growth and security. With the advent of more powerful computing tools, computational science is often described as the third pillar of science, joining the traditional pillars of theory and experiment. Students will work in small groups and with faculty guidance while employing innovative computational tools to solve problems in applied science. Students will acquire essential technical and professional skills by participating in faculty-led workshops. One-on-one interactions with faculty mentors, collaboration between students, independent inquiry, and guided training will provide students with valuable skills in programming, computational modeling, simulation, data analysis, visualization, research management, and communication. The research conducted through this REU Site program has the potential to produce high-impact, publication-quality results in the fields of materials science, epidemiology, cellular biology, and molecular dynamics. Targeted recruiting and selection efforts will ensure that under-represented constituencies, including women, minority, first generation college, and veteran students, are well represented in the program.The objective of this REU Site program is to recruit undergraduate students into the fast growing, and interdisciplinary field of computational science. Faculty will mentor students as they integrate computation and mathematical/statistical theory to solve problems in molecular dynamics, epidemiology, materials science, and cellular biology. Research problems will form and test mechanistic hypotheses about the structure of biological proteins, yield insights into the dynamics and control of diseases that pose a major threat to public health, address computational topics in the design of optical and acoustical metamaterials, and investigate fundamental principles of cellular decision-making. These research projects, together with a series of bi-weekly workshops, will support innovation by training students in a) Python programming, including best practices for readability, documentation, sharing, and structuring of code and b) tools (e.g. MDAnalysis, Comsol, and Pymol) and techniques (e.g., machine learning, sensitivity analysis, and parameter estimation) for model development, data analysis, and visualization. Students with a strong background in mathematics, computer science, physics, or biology, and an intense interest in applied science and computation are encouraged to apply.This award reflects NSF's statutory mission and has been deemed worthy of support through evaluation using the Foundation's intellectual merit and broader impacts review criteria.

这个跨学科的REU网站程序将准备本科生的研究，就业和先进的研究在计算科学的新兴学科-这不仅是科学的进步，但对我们国家的经济增长和安全的关键学科。随着更强大的计算工具的出现，计算科学通常被描述为科学的第三支柱，加入传统的理论和实验支柱。学生将在小组中工作，并与教师的指导，同时采用创新的计算工具来解决应用科学中的问题。 学生将通过参加教师领导的研讨会获得基本的技术和专业技能。与教师导师一对一的互动，学生之间的合作，独立探究和指导培训将为学生提供编程，计算建模，模拟，数据分析，可视化，研究管理和沟通方面的宝贵技能。通过这个REU网站计划进行的研究有可能在材料科学，流行病学，细胞生物学和分子动力学领域产生高影响力，出版质量的结果。有针对性的招聘和选拔工作将确保代表性不足的选区，包括妇女，少数民族，第一代大学生和退伍军人学生，在程序中得到充分的代表。这个REU网站程序的目标是招募本科生进入快速增长，跨学科的计算科学领域。教师将指导学生，因为他们整合计算和数学/统计理论，以解决分子动力学，流行病学，材料科学和细胞生物学的问题。研究问题将形成和测试有关生物蛋白质结构的机械假说，深入了解对公共健康构成重大威胁的疾病的动力学和控制，解决光学和声学超材料设计中的计算问题，并研究细胞决策的基本原则。这些研究项目，以及一系列双周研讨会，将通过培训学生在a）Python编程，包括可读性，文档，共享和代码结构和B）工具（例如MDAnalysis，Comsol和Pymol）和技术（例如，机器学习、灵敏度分析和参数估计），用于模型开发、数据分析和可视化。 我们鼓励在数学、计算机科学、物理学或生物学方面有很强背景的学生，以及对应用科学和计算有浓厚兴趣的学生申请。该奖项反映了NSF的法定使命，并通过使用基金会的智力价值和更广泛的影响审查标准进行评估，被认为值得支持。

项目成果

Acoustic ring resonator: Experiments and simulations

声环谐振器：实验和模拟

• DOI: 10.1063/5.0077330
• 发表时间: 2022
• 期刊: AIP Advances
• 影响因子: 1.6
• 作者: Robertson, William M.;Vazquez, Carina;LaVerde, Alexander;Wassenberg, Austin;Olson, Colleen;Lopez, Jennifer
• 通讯作者: Lopez, Jennifer

Attention Is Not Enough

注意力还不够

• 发表时间: 2022
• 期刊: Proceedings of the Annual Conference of the Cognitive Science Society
• 作者: Miller, Joshua;Naderi, Shawheen;Millinax, Channing B.;Phillips, Joshua L.
• 通讯作者: Phillips, Joshua L.

Acoustic waveguide demultiplexer based on Fano resonance: Experiment and simulation

基于 Fano 共振的声波导解复用器：实验与仿真

• DOI: 10.1063/5.0087034
• 发表时间: 2022
• 期刊: AIP Advances
• 影响因子: 1.6
• 作者: Robertson, William M.;Vazquez, Carina;Lopez, Jennifer;LaVerde, Alexander;Giuntini, R. J.
• 通讯作者: Giuntini, R. J.

Optimal impulse control of West Nile virus

• DOI: 10.3934/math.20221075
• 发表时间: 2022
• 期刊: AIMS Mathematics
• 影响因子: 2.2
• 作者: F. Agusto;Daniel Bond;Adira Cohen;Wandi Ding;R. Leander;Allis Royer

Malaria Modelling, an optimal control problem.

疟疾建模，一个最优控制问题。

• 发表时间: 2022
• 期刊: Research outreach
• 作者: Wandi Ding