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REU Site: Next Generation Sequencing

REU 站点：下一代测序

基本信息

批准号：
1852189
负责人：
Betsy Read
金额：
$ 39.09万
依托单位：
California State University San Marcos Corporation
依托单位国家：
美国
项目类别：
Standard Grant
财政年份：
2019
资助国家：
美国
起止时间：
2019-03-01 至 2024-02-29
项目状态：
已结题

来源：
https://www.nsf.gov/awardsearch/showAward?AWD_ID=1852189&HistoricalAwards=false
关键词：
REU Site Next Generation Sequencing

项目摘要

This REU Site award to California State University San Marcos, located in San Marcos, CA, will support the training of 10 students for 10 weeks during the summers of 2019-2021. This intensive research program will focus on the unifying theme of Next Generation Sequencing (NGS) and Beyond: From Beetles to Beer. Students will select a mentor from a diverse team of scientists who use genomic, transcriptomic, metagenomic, and epigenomic methods to address fundamental biological questions, including biological control, yeast biology in beer flavoring, soil microbiomes in agriculture, amphibian ranavirus pathogenesis, and biomineralization in invasive coccolithophores. The residential program will foster a community of scholars who will transition from being students to researchers, and from learning to discovery. Weekly enrichment activities are embedded in the program with seminars, bioinformatics workshops, and field trips, to highlight the breadth of NGS applications. In addition to graduate school and career workshops, a culminating Poster Showcase is planned to celebrate research accomplishments of participants and encourage future presentations at regional and national meetings. It is anticipated that a total of 30 students, primarily from schools with limited research opportunities, will be trained in the program in conducting and presenting independent research. With a strong commitment to supporting underrepresented groups, including veterans, and first-generation college students, the CSUSM NSF REU program will contribute to building a diverse and talented population of next generation scientists. We hope to host a strong cohort of biologists that will be well poised to apply to competitive doctoral/Masters programs. A common web-based assessment tool used by all REU Site programs funded by the Division of Biological Infrastructure, and a tri-weekly assessment of applying knowledge to research will be used to determine the effectiveness of the training program. Students will be tracked after the program in order to determine their career paths. Students will be asked to respond to an automatic email sent via the NSF reporting system. More information about the program is available by visiting https://www.csusm.edu/bioreu/index.html, or by contacting the PI (Dr. Betsy Read at bread@csusm.edu) or the co-PI (Dr. Arun Sethuraman at asethuraman@csusm.edu).This award reflects NSF's statutory mission and has been deemed worthy of support through evaluation using the Foundation's intellectual merit and broader impacts review criteria.

这个REU网站奖给位于加州圣马科斯的加州州立大学圣马科斯，将支持10名学生在2019年至2021年的夏天进行为期10周的培训。这个密集的研究计划将集中在下一代测序（NGS）和超越的统一主题：从甲虫到啤酒。学生将从不同的科学家团队中选择一位导师，他们使用基因组学，转录组学，宏基因组学和表观基因组学方法来解决基本的生物学问题，包括生物控制，啤酒调味剂中的酵母生物学，农业中的土壤微生物组，两栖动物Ranavirus发病机制和侵入性颗石藻中的生物矿化。住宅计划将培养一个学者社区，他们将从学生过渡到研究人员，从学习到发现。每周的丰富活动嵌入在该计划中，包括研讨会，生物信息学研讨会和实地考察，以突出NGS应用的广度。除了研究生院和职业讲习班外，还计划举办一个最后的海报展示会，庆祝参与者的研究成就，并鼓励今后在区域和国家会议上发表演讲。预计共有30名学生，主要来自研究机会有限的学校，将在该计划中接受培训，进行和介绍独立研究。通过坚定地致力于支持代表性不足的群体，包括退伍军人和第一代大学生，CSUSM NSF REU计划将有助于建立下一代科学家的多元化和有才华的人口。我们希望能够拥有一支强大的生物学家队伍，这些生物学家将准备好申请竞争激烈的博士/硕士课程。由生物基础设施司资助的所有REU研究中心项目使用的通用网络评估工具以及将知识应用于研究的三周评估将用于确定培训项目的有效性。学生将在课程结束后进行跟踪，以确定他们的职业道路。学生将被要求通过NSF报告系统自动发送电子邮件。有关该计划的更多信息，请访问https：//www.csusm.edu/bioru/index.html，或联系PI（Betsy Read博士，bread@csusm.edu）或联合PI（Arun Sethuraman博士，asethuraman@csusm.edu）。该奖项反映了NSF的法定使命，并被认为值得通过使用基金会的智力价值和更广泛的影响审查标准进行评估来支持。

项目成果

期刊论文数量（8）

专著数量（0）

科研奖励数量（0）

会议论文数量（0）

专利数量（0）

Characterizing the microbial metagenome of calcareous stromatolite formations in the San Felipe Creek in the Anza Borrego Desert

安萨博雷戈沙漠圣费利佩溪钙质叠层石地层的微生物宏基因组特征

DOI：
10.1128/mra.00881-23
发表时间：
2024
期刊：
Microbiology Resource Announcements
影响因子：
0.8
作者：
Stancheva, Rosalina;Sethuraman, Arun;Khadivar, Hossein;Archambeau, Jenna;Caughran, Ella;Chang, Ashley;Hunter, Brad;Ihenyen, Christian;Onwukwe, Marvin;Palacios, Dariana
通讯作者：
Palacios, Dariana

Lack of phenotypic variation despite population structure in larval utilization of pea aphids by populations of the lady beetle Hippodamia convergens