CAREER: Evolutionary and Adaptive Histories of Human Populations: Integration of Ancient DNA Research and Interactive Education

这个CAREER项目将研究美洲种群的进化历史。来自古代和活着的个体的DNA将被整合，以表征欧洲人接触之前和之后的进化过程和人口动态，包括适应不断变化的环境和病原体的生物和社会后果，农业的采用，以及从小群体生活到大型互联城市的转变。为了全面了解当地人口的历史，该项目将利用整个美洲人类文明的古代DNA，结合最先进的计算方法和考古背景。该项目还将支持若干综合教育目标。研究人员将建立一个密集的夏季研究计划，将来自土著社区的参与者与当地大学生聚集在一起。合作者和学生将不仅有助于具体的研究目标，但也有助于开发一个关于美洲的古老血统的互动公共网站。该资源不仅将揭示古代社会、人口统计和进化历史，还将允许LatinX用户探索自己的祖先。通过利用古代和现代个体的群体水平全基因组，该项目将使用比较统计和经验方法揭示新的基因组特征，这些特征随着时间的推移而改变适应性表型，在区域和大陆层面上发现古代移民，并调查欧洲接触对土著居民的进化影响。此外，这项研究产生的深度覆盖全基因组将为美洲人民提供参考面板，这将揭示每个地区独特的稀有等位基因和基因组特征。这些发现将被置于一个更复杂的人口框架中，以提供这些进化适应的更丰富的特征，同时阐明因疾病和殖民化而复杂化的细微差别的人口历史。这将有助于建立更大的使用和古代DNA的权力，以表征进化和文化事件的重要方面，否则可能仍然棘手，从而深化遗传学与人类学理论的整合。这个奖项反映了NSF的法定使命，并已被认为是值得通过使用基金会的智力价值和更广泛的影响审查标准进行评估的支持。

This CAREER project will examine the evolutionary history of populations in the Americas. DNA from both ancient and living individuals will be integrated to characterize evolutionary processes and population dynamics before and after European contact, including the biological and social consequences of adapting to changing environments and pathogens, the adoption of agriculture, and the shift from living in small groups to large interconnected cities. To build a comprehensive picture of local population histories, the project will utilize ancient DNA from human civilizations throughout the Americas in combination with state-of-the-art computational methods and archaeological contexts. The project will also support several integrated educational goals. The investigator will establish an intensive summer research program, bringing together participants from indigenous communities with local undergraduates. Collaborators and students will not only contribute to the specific research aims but also help develop an interactive public website about the ancient lineages of the Americas. This resource will not only reveal ancient social, demographic, and evolutionary histories but also allow LatinX users to explore their own ancestry.By utilizing population-level whole genomes from both ancient and modern individuals, this project will use comparative statistical and empirical methods to reveal novel genomic features that putatively underlay adaptive phenotypes as they evolved through time, discover ancient migrations on both regional and continental levels, and investigate the evolutionary impact of European contact on indigenous populations. Furthermore, the deep coverage whole genomes generated from this study will provide a reference panel for the people of the Americas, which will uncover rare alleles and genomic features unique to each region. These findings will be placed into a more complex demographic framework to provide a richer characterization of these evolutionary adaptations, while elucidating nuanced demographic histories complicated by disease and colonization. This will serve to establish the greater use and power of ancient DNA to characterize important aspects of evolutionary and cultural events, which might otherwise remain intractable, and thereby deepen the integration of genetics with anthropological theory.This award reflects NSF's statutory mission and has been deemed worthy of support through evaluation using the Foundation's intellectual merit and broader impacts review criteria.